Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02221 ATGAAAACCCAATACCTCTTACCCTTTCTGCTTCTTATTTTCACACCCTTCTCAATTTCATTTTCTCCCACAGATAACTTCCTTCTTAGTTGTGGATCACACAACAATGCTTCCCTCTTCAACCGAGTCTTCATGGCCGATTCCACCTCCTCTTTTCTCTCTTCAGATAATTCCATTTCACTCACATACCAAAAGCCACCTCAGAATTTTCCCACTTTGTACCACACTGCCAGAGTTTTCAGCAGCACTGGGCGGTACAGGTTCAACCTCAAGAAAAACGGCATCCACTTGGTGCGTTTTCATTTCTCACCCTTCAAGGCTCAAAGTTTTGATCTCAAGTCTGCAAAATTTAGTGTCTTTGCCAATGGTGTTTCGGTGTTGAGCAATTTCCAGCCACCTAATGATGTTCTGCTCAAAGAGTTTATTCTGAagatagagtcaaacttgcttgagattttgtttaagcctgttggtgactcaggttttgcCTTTGTCAATGCTTTGGAGGTGTTCACTGCCCCTGTGGATTTTGTTATAGATTTTGGAGCCAGGTTGGTTGGTCCTTCTGGGGTGGAGGAGTACAGAAACCTTTCATCTAAGGTTTTGGAGACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTTAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTCTTTAAGGATGCAGCAAAGCCTGCAGTGAGCACTCACACACCAAATTATCAAAAGGGAGGTGCAACAAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCAAGGTTCAACATAACCTGGAACTTCCCTGTGTCTCCTAGTAGTGGTCCACACTTGGTTCGGTTGCATTTCTGTGACATTGTTAGTCCTGCTCTCAACGTGCTCTACTTTGATGTGTACATCAATGGCTACATTGCGTACAAGGATCTTGATTTGTCAGCCCTCACAATCCACACACTTGCATCTCCTGTCTATGTGGATTTTGTTACAAATTCAGATGATTCAGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGACCTGAGCAGTTCCATAAGGATGAATGCCATATTGAATGGTGCAGAGATAATGAAGATGGTCAATGATGGCAGTACTAATATTGTGCATTGGAGGAAGAATTTgccagccatggGTGATGTCTTGTGGAATTTGGAATATGCACTTCAGCTCCAAGAAAGTGGACAACAAAGGGAGCCACATGCCAATAGCAGTGCTAGTGCGACTACTACAGTTATTGCTGAAAATTCTTCTGCCAACAGAAGAATTGAGAGGGATAATGGTTATTGTTCTTTAGATGCAAGTACTAGCCAAGTGTTTTCTCAGCTAATGAACAACGAAGGCAGATAG 1422 0.4037 MKTQYLLPFLLLIFTPFSISFSPTDNFLLSCGSHNNASLFNRVFMADSTSSFLSSDNSISLTYQKPPQNFPTLYHTARVFSSTGRYRFNLKKNGIHLVRFHFSPFKAQSFDLKSAKFSVFANGVSVLSNFQPPNDVLLKEFILKIESNLLEILFKPVGDSGFAFVNALEVFTAPVDFVIDFGARLVGPSGVEEYRNLSSKVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKDAAKPAVSTHTPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSPSSGPHLVRLHFCDIVSPALNVLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDSGFVQVSVGPSDLSSSIRMNAILNGAEIMKMVNDGSTNIVHWRKNLPAMGDVLWNLEYALQLQESGQQREPHANSSASATTTVIAENSSANRRIERDNGYCSLDASTSQVFSQLMNNEGR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02221 473 MobiDBLite consensus disorder prediction 418 442 - -
Cca02g02221 473 Pfam Malectin-like domain 29 384 IPR024788 -
Cca02g02221 473 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 398 - -
Cca02g02221 473 Gene3D - 26 176 - -
Cca02g02221 473 Gene3D - 201 386 - -
Cca02g02221 473 PANTHER OS07G0166700 PROTEIN 15 398 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02221 Cca-Chr2 42727020 42729467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02221 6 386 Glycosyltransferase AT4G00300 42.317 1.04e-98 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02221 - - gmx:100801169 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02221 02 42727020 42729467 Cca02g02221 02 42727020 42729467 ECH
Cca08g00712 08 13437976 13440477 Cca02g02221 02 42727020 42729467 PCT