Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02201 ATGGGAAACAACCTTAACCGTGAAAGAGAAGGGCATGGCTTGCCTAAAGTTTCATCACTTGTTCAACATATATCATCAAATGAAGTAGCCAACTTTGACACTGTTGACGTGAAAAATCTCAGCTCATCTTTCAAAGAAAATGAAACAGTCTTAGCAGGAAGCCAAGGTGATGAACATGGGGCCATAAATCATCAAAATAAGCATTCGGTGTCTATAAACATGCCATTCTCTCGAGAAGAAGTTCAGCAAGATAACACCATAAGAGTTCTCTATAGTGCCGAAACTACAGGCTCCAAACCACCATTGCCATCACAATCAATGCCAAATGACAGTATCAATCTTACCAATCATGAAAGCACCGACAGCTTAAAGGATAAGAGGCTTGAGTTTTTCGAAACATGGTCCAGTAAACTTGAGGGACAATTGTCAATTCTACATGGAAGGGTACCAAAACAAAATGTAGAAGAGGATAACAGCTTAGACAAAACTAAAATGCCTTTAACTGTTGATTTGTTCTTCAAAGCATCGGAAGGTCCACAATTACTAACTCCTAAGAAATCTTCAGAAGAGAAGGTGCTACCTGAGGACAAGAAGTGGCCATTTCTTCTTCGGTTTCCCGTTTCATCTTTTGGTATTTGTCTTGGAGTTAGCAGCCAAGCAATTCTTTGGAAAACATTGGCCGAGTCACCTTCCACTGAATTTCTTCACATAAGCCTTAGAATAAATTTTACCCTATGGTTCATCTCTATTGCTCTTGTTGCCACTATTTTCACCATCTATCTCTTCAAAATAATTCTCTATTTTGAAGCAGTTCGTAGTGAGTACCATCATCCAGTTCGTGTTAACTTCTTCTTTGCCCCATGGATATCTCTCTTGTTCTTAGCTCTTGGAGTTCCACCATCACTTTCCAAAGACTTGCATCATGCAGTTTGGTATGCTCTAATGATTCCATTGTTCTGCCTTAAGCTCAAGATATATGGACAGTGGATGTTTGGGGGCCGAAGGATGCTCTCAAAGGTGGCAAATCCAACAAATTTCCTAGCAATTATTGGAAATTTTGTGGGGGCCTTGTTGGGAGCATCTATGGGCCTAAAAGAAGGGCCAATTTTCTTCTTTGCTATTGGGCTTGCTCACTACATGGTGCTATTTGTAACCCTCCACCAGATGCTTCCAACAAATAAAACCATCCCAAAAGACCTCCATCCAGTGTTCTTTCTTTTTGTGGCACCACCTAGTGTTGCTGCTACTGCATGGGCCAAGATTCAGGGTTCTTTCCATTATGAATCACGGATTTTCTATTTCGTAGCCATGTTCCTATATCTCTCGCTGGCTGTCCGGGTCAATCTCTTCAGAGGATTCAAATTCTCACTTTCATGGTGGGCCTACACCTTTCCAATGACTGCTGCAGCAATTGCAACCATAGGCTACTCTAATCAAGTGACAAATGTTGTAACTCAAACTTTGAGTGTAATATTGAGTCTCATTTCTACATTCACAGTAACATCAGTGCTTGTCTCGACAATATTGCATGCCTTTGTCCTCCGAGACCTCTTTCCCAATGACCTTGCCATTGCCACTAGTGAGGGAAAGCAAAAACCACATAGGAAATGCTTCCCATTAGGATTTGGGAGCCATGGTCATGCCAAAAAGACTGAAAATAACTTGAAGTCTGTGGACTCGGATAGAAAGGATTTTGTTTAG 1701 0.4115 MGNNLNREREGHGLPKVSSLVQHISSNEVANFDTVDVKNLSSSFKENETVLAGSQGDEHGAINHQNKHSVSINMPFSREEVQQDNTIRVLYSAETTGSKPPLPSQSMPNDSINLTNHESTDSLKDKRLEFFETWSSKLEGQLSILHGRVPKQNVEEDNSLDKTKMPLTVDLFFKASEGPQLLTPKKSSEEKVLPEDKKWPFLLRFPVSSFGICLGVSSQAILWKTLAESPSTEFLHISLRINFTLWFISIALVATIFTIYLFKIILYFEAVRSEYHHPVRVNFFFAPWISLLFLALGVPPSLSKDLHHAVWYALMIPLFCLKLKIYGQWMFGGRRMLSKVANPTNFLAIIGNFVGALLGASMGLKEGPIFFFAIGLAHYMVLFVTLHQMLPTNKTIPKDLHPVFFLFVAPPSVAATAWAKIQGSFHYESRIFYFVAMFLYLSLAVRVNLFRGFKFSLSWWAYTFPMTAAAIATIGYSNQVTNVVTQTLSVILSLISTFTVTSVLVSTILHAFVLRDLFPNDLAIATSEGKQKPHRKCFPLGFGSHGHAKKTENNLKSVDSDRKDFV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02201 566 Gene3D - 201 518 IPR038665 -
Cca02g02201 566 CDD TDT_SLAC1_like 204 507 - -
Cca02g02201 566 PANTHER S-TYPE ANION CHANNEL SLAH3 11 560 - -
Cca02g02201 566 Pfam Voltage-dependent anion channel 205 508 IPR004695 GO:0016021|GO:0055085
Cca02g02201 566 PANTHER - 11 560 IPR030183 GO:0006873|GO:0008308|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02201 Cca-Chr2 42510735 42513912 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02201 - - gmx:100789128 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02201 02 42510735 42513912 Cca02g02201 02 42510735 42513912 ECH
Cca08g00753 08 14674010 14679915 Cca02g02201 02 42510735 42513912 PCT