Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01401 ATGTCTCTAGTGACCGCAGAGATCAAAGCCAAATCAGAGGTGTACCATGGAGATGAACTCTGCAGAGAAAAGTCCAAGTTACTGTTGAAGGAAGTAGGGCTACCCAATGGTCTTCTGCCCTTGAAGGACATTGAGGAAGTAGGGTACGAGAAGGAAAGTGGGTTTGTGTGGCTGAAGCAGAAGAAGTCCATAAACCACAAGTTTGAGAAGATTGGGAAGCTAGTGTCCTATGCTCCTGAGATCACAGCCTATGTTGAGCTTGGCAAGATAAAGAAGCTGACTGGTGTGAAGACCAAGGAGCTCTTGGTTTGGATCACACTGAATGAGATCTTTGTTGATGATCCACCCACTGGGAAGATCACATTCAAGACCCCTTCAGGGCTTTTCAGGACATTCCCAGTCTCAGCTTTTGAGGTTGAAGAGCCAGTTAAGGAAGTgaagaaggataaggaggaacaagttaaggaagtgaagaaggaagaagaaCACAACAAGGAAGTCAACCAAGTTGCTACTGCTGTTAAAGTCCAAGAGGGGTATAAGATCTGGTATGCTCTTGCTCCGTCGTCTCTGATTCCTTCTCTTTCAACTGTACACATGGATCCCATTCAGCCCGAGGGTGAAAACTACGCCAATCCCAAGACTTGCTTATTTCATGTGCTATTCAAGGCCTCAGCCTTGGCATTTTACATTCTATCGGCACTCTTTATTGATAACTTTGTCATCATTTTTGTGGTGACTGTCCTCCTTGCTGCTCTTGATTTTTGGGTGGTCAAGAATGTGAGTGGCCGGATTTTAGTTGGTTTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTCGACCATGAGTCATTGGCTCGGATGAACAAGAAAGATTCATGGCTTTTCTGGTGGACCCTGTACATTACGGCAGTTGCATGGATTGTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTGCTTGTTGTAGGAGTTTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAGTGCAAAAAAGATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCGTCTACCCTCCAGTCAGCATTCAGTGTCGTCTGA 1149 0.4299 MSLVTAEIKAKSEVYHGDELCREKSKLLLKEVGLPNGLLPLKDIEEVGYEKESGFVWLKQKKSINHKFEKIGKLVSYAPEITAYVELGKIKKLTGVKTKELLVWITLNEIFVDDPPTGKITFKTPSGLFRTFPVSAFEVEEPVKEVKKDKEEQVKEVKKEEEHNKEVNQVATAVKVQEGYKIWYALAPSSLIPSLSTVHMDPIQPEGENYANPKTCLFHVLFKASALAFYILSALFIDNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFECLDHESLARMNKKDSWLFWWTLYITAVAWIVLAIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQIQQFASQTIASRFSSTLQSAFSVV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01401 382 Coils Coil 143 170 - -
Cca02g01401 382 PANTHER GOLGI APPARATUS MEMBRANE PROTEIN TVP23 200 382 - -
Cca02g01401 382 SUPERFAMILY At5g01610-like 3 143 IPR036758 -
Cca02g01401 382 Gene3D - 5 149 IPR036758 -
Cca02g01401 382 PANTHER UNCHARACTERIZED 200 382 IPR008564 GO:0016021
Cca02g01401 382 Pfam Protein of unknown function, DUF538 28 138 IPR007493 -
Cca02g01401 382 Pfam Eukaryotic protein of unknown function (DUF846) 212 351 IPR008564 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01401 Cca-Chr2 32498775 32505069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01401 - - gmx:100499702 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01401 02 32498775 32505069 Cca02g01401 02 32498775 32505069 ECH
Cca03g02866 03 49963815 49966802 Cca02g01401 02 32498775 32505069 PCT