Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01274 ATGGGAAACCAAGTCTCACTAAGGCCCTCAGATTCGACGGGAAGAATCGTGTTATGGGACGGATCAGTGCAGGAAATTGAGCAATCGGTGACAGTGGCAGAGTTAATGCTGGAGCACCCAGAGCAAGTGGTGGTGGAGCTGCATTCAGCGGTGACCCAGAAAAGAGCAACACCGTTACCAGCGGATAAGAAGCTAGAGAGAAACAAGGTGTATCTGATGGTTCCCGTGAAGCGAGGGAAGCCGGTTGGGTTAAGCGGAGAAGAGGGTCGTCGCATGTTGTTGCTCCTTAACTCTGCTCTGCATTCAAAGTCCTCTCTTGTCACTTCTTCCAAGTTTCTTCCCTGGCTTACGCGTTTGTGCCAAAACACAACCATTGTGGAGCCTCAGGCTCAGAGAAAGGAGCATGAAACGGAGAAGAGGGAAGAGAGGTTCCACTTTTCTGAGATGTTGCCGGAAACGTTGGAAGGGAGGCCCGAGTATTTGAACCGCCAGTTGTCGGCCAAGGGGTGGAAGCCTAGTTTGGACACCATTAAGGAGAAGAATATTGACACAAAACTCACTCACTGGATTTTAATTCAGAAGCAACGCTAA 591 0.4992 MGNQVSLRPSDSTGRIVLWDGSVQEIEQSVTVAELMLEHPEQVVVELHSAVTQKRATPLPADKKLERNKVYLMVPVKRGKPVGLSGEEGRRMLLLLNSALHSKSSLVTSSKFLPWLTRLCQNTTIVEPQAQRKEHETEKREERFHFSEMLPETLEGRPEYLNRQLSAKGWKPSLDTIKEKNIDTKLTHWILIQKQR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01274 196 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 187 - -
Cca02g01274 196 Pfam PADRE domain 1 179 IPR025322 -
Cca02g01274 196 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01274 Cca-Chr2 30868451 30869124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01274 - - gmx:100784884 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01274 02 30868451 30869124 Cca02g01274 02 30868451 30869124 ECH
Cca03g02782 03 49188142 49189336 Cca02g01274 02 30868451 30869124 PCT