Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01273 ATGGGTTCCAGCTTCTCAGCCCTCCCCACTATGTGTATGTTGGTCCTAGTCCTCCTCTTGTGGGGTGGCGAGGGACGTGAGCCATTCGCGTGTGACCCAAAGGACGGTGGCACAAAGGGGTTACCCTTTTGTAGGAGTGGGTTGGCAATAGAAGCAAGAGTGAAGGACCTGGTTGGAAGGTTGAGACTGCAAGAAAAGGTTAACCTTCTAGTGAACAATGCCGCAGCAGTTCCGAGGCTTGGAATCAAAGGTTACGAGTGGTGGTCGGAGGCACTTCATGGGGTTTCCAATGTGGGCCCCGGAACCAAGTTTCGTGGCCAATTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTCTCTGGGAAGCAATCGGACGGGTTGCATCGGACGAAGCAAGAGCAATGTACAATGGAGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTTAACATTTTTAGGGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAAATACGCTGCTAGTTACGTCAGGGGACTACAGGGAACGGACGGTGACCGGTTGAAGGTGGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGACAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATGGAGGAGACGTTTAACGTGCCATTCAGGATGTGTGTGAAGGAAGGGAAAGTGGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGTGTTCCTACCTGTGCGGACCCCAACCTCCTCAAGAGAACTGTTCGTGCCCAATGGGGTCTTAATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTACACTAGCCAACATTACACATCTACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGGAGCGCATACGCAGAATGCTGTGAAAAAAGGCCTTTTAAGCGAAGCTGATGTCAATGGGGCTTTAGCCAACACGTTAACAGTCCAAATGAGGCTAGGGATGTATGACGGTGAGCCATCAGGCCATCCATATGGCAACCTTGGCCCAAGAGATGTGTGCAGCCCAAGTCACCAAGAGCTAGCCCTAGAAGCCGCAAGACAAGGGATTGTGCTTCTTAAAAACAAGGGTCCTTCTTTGCCTCTCTCCACGAGGCGTCACCGCACCGTGGCCGTTATTGGGCCCAATTCTAATGTCACTGTCACAATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGCCCCTTACAAGGAATAGGTGCACACGCCAGGACTATTCACGAGCTCGGTTGTGCAAATGTGGCTTGCACTGATGACAAGCAATTCGGGAGAGCTATAAATGCAGCCCAACAAGCAGATGCAACGGTGCTAGTAACGGGCCTGGACCAATCCATTGAGGCTGAAACCGTGGACAGGGCTGGCCTCCTTCTTCCCGGGCGTCAACAAGAGCTTGTGTCCAAAGTAGCAGCTGCCTCAAAGGGCCCAACAATTTTGGTCATAATGTCTGGTGGGCCGGTAGATATAACTTTTGCAAAGAACGACCCTCGAATCCAAGCCATCTTGTGGGCCGGTTATCCCGGTCAAGCCGGTGGCGCCGCCATTGCAGATATCTTGTTCGGAAACGCTAACCCAGGAGGCAAGCTACCTATGACATGGTACCCAGAAGGTTACATTAAAAATTTGGCAATGACAAATATGGCAATGCGAGGAAGGCGTTCCACAGGGTACCCTGGAAGAACGTACCGATTCTACAATGGGCCAGTGGTGTATCCATTTGGTTACGGATTGTCTTACACACACTTTGTTCATACACTAGCTAGTGCACCCAAAGTGGTTTCAATTCCCGTGGATGGCCACCGCCACGGCAACAGCTCCAACATTGCGAATAAGGCAATTAGAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGCCTCCACGTGGACGTTAAAAACGTTGGAACCAGAGATGGCACTCACACGTTGTTGGTGTTCTCAGCACCACCTGCGGGTAATGGCCACTGGGCCCCACGCAAGCAACTAGTGGCTTTTGAGAAAGTCCACGTTCCTGCCAAGGGTCAACAGCGAGTGCGAGTCAACGTTCATGTTTGTAAGCTCTTGAGCGTGGTGGACAGGTCTGGGACTAGGAGAATTCCAATGGGGTTGCATAGCATTCACATTGGTCATGTTAAACACTTCGTGTCTCTTCAGGCAGAAACACTTGGAATTATCAAGTCCTGA 2322 0.5125 MGSSFSALPTMCMLVLVLLLWGGEGREPFACDPKDGGTKGLPFCRSGLAIEARVKDLVGRLRLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFRGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDMEETFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKRTVRAQWGLNGYIVSDCDSVGVFYTSQHYTSTPEEAAADAIKAGLDLDCGPFLGAHTQNAVKKGLLSEADVNGALANTLTVQMRLGMYDGEPSGHPYGNLGPRDVCSPSHQELALEAARQGIVLLKNKGPSLPLSTRRHRTVAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGAHARTIHELGCANVACTDDKQFGRAINAAQQADATVLVTGLDQSIEAETVDRAGLLLPGRQQELVSKVAAASKGPTILVIMSGGPVDITFAKNDPRIQAILWAGYPGQAGGAAIADILFGNANPGGKLPMTWYPEGYIKNLAMTNMAMRGRRSTGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLASAPKVVSIPVDGHRHGNSSNIANKAIRVTHARCGKLSISLHVDVKNVGTRDGTHTLLVFSAPPAGNGHWAPRKQLVAFEKVHVPAKGQQRVRVNVHVCKLLSVVDRSGTRRIPMGLHSIHIGHVKHFVSLQAETLGIIKS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01273 773 PANTHER SUGAR HYDROLASE-RELATED 5 769 IPR044993 GO:0009044|GO:0045493
Cca02g01273 773 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 625 IPR002772 GO:0004553|GO:0005975
Cca02g01273 773 Gene3D Immunoglobulins 650 770 IPR013783 -
Cca02g01273 773 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 5 769 - -
Cca02g01273 773 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 628 IPR036881 GO:0004553|GO:0005975
Cca02g01273 773 SUPERFAMILY (Trans)glycosidases 42 394 IPR017853 -
Cca02g01273 773 Gene3D - 381 626 IPR036881 GO:0004553|GO:0005975
Cca02g01273 773 SMART Fn3_like_2 687 758 IPR026891 -
Cca02g01273 773 Pfam Glycosyl hydrolase family 3 N terminal domain 107 351 IPR001764 GO:0004553|GO:0005975
Cca02g01273 773 Pfam Fibronectin type III-like domain 689 756 IPR026891 -
Cca02g01273 773 Gene3D - 53 367 IPR036962 GO:0004553|GO:0005975
Cca02g01273 773 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Cca02g01273 773 PRINTS Glycosyl hydrolase family 3 signature 201 217 IPR001764 GO:0004553|GO:0005975
Cca02g01273 773 PRINTS Glycosyl hydrolase family 3 signature 275 293 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01273 Cca-Chr2 30852697 30858054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01273 26 773 Glycoside Hydrolase AT1G02640 74.332 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01273 - - gmx:100778624 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01273 02 30852697 30858054 Cca02g01273 02 30852697 30858054 ECH
Cca03g02783 03 49202786 49210080 Cca02g01273 02 30852697 30858054 PCT