Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01242 ATGTCCCTCACCGCTctcctcctcctcctcctcctcGTTGCGGCGCCCATCGCCGCCACCGCCACCGCCGCACCGACGGCGTACGAGATGCTGGAGAGCTTCCACTTTCCGGAGGGCATTCTGCCTAAAGGAGTCACCGGCTACGAACTGGACCCGGCCACCGGCAAGTTCCGCGCCGATCTGAACGGTTCGTGCAGTTTCGCACTCGAAGGATCGTACCGATTGAGTTACCAGCCAACCATCACCGGCTACATATCCGACGGCAGGCTCACCGAACTCCGCGGCATAAGCGTTAAGGTCCTCTTCTTCTGGCTCAACATCCtcgacgtcgctcgcgtcggcgatgacctcgatttctccgtcggcgtcgCCTCCGCTTCCTTTCCTCTTGATAACTTCTTCGTCTCTCCGCAGTGCGGTTGCGGCTTGGATTGCAATGATTTACGAATAAGGAAGCTCAATTTGGGAAATCCCTCCGTTTCCTCGGTGTAG 492 0.4959 MSLTALLLLLLLVAAPIAATATAAPTAYEMLESFHFPEGILPKGVTGYELDPATGKFRADLNGSCSFALEGSYRLSYQPTITGYISDGRLTELRGISVKVLFFWLNILDVARVGDDLDFSVGVASASFPLDNFFVSPQCGCGLDCNDLRIRKLNLGNPSVSSV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01242 163 Gene3D - 15 140 IPR036758 -
Cca02g01242 163 PANTHER T31J12.3 PROTEIN-RELATED 7 163 IPR007493 -
Cca02g01242 163 SUPERFAMILY At5g01610-like 4 145 IPR036758 -
Cca02g01242 163 Pfam Protein of unknown function, DUF538 27 133 IPR007493 -
Cca02g01242 163 PANTHER F22D16.19 PROTEIN 7 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01242 Cca-Chr2 30355164 30356033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01242 - - gmx:100808207 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01242 02 30355164 30356033 Cca02g01242 02 30355164 30356033 ECH
Cca02g01242 02 30355164 30356033 Cca03g02822 03 49566539 49567329 ECH