Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01193 ATGCGTCACGGTGAGTTAAAAAACGAGTCTCCAGTTGAATTCAACCAGGTTTTTGGTGTTGGTGATATCAAAGACAAGATGGCTGAAATGAAGAAAAATGAACCGTCACACTGGTGGTGGCTTGAGAGCCACAGCAACACTAGACGATCCCCTTGGCTTCAATCTACTCTCGCTGAACTAAATGAGAAGACAAAGGCAATGTTAAAACTGATCGAAGAGGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTATTATAAGAAGAGACCACAGCTTGTGAGCATGGTTGAAGATTTCTATAGGACACACCGCTCATTAGCTGAGCGCTATGATCAAGTCACTGGAATTCGCAATCAGAAGACAGGGGGTTCCCCTTTTTCTCCACTCAAGCATCATCAATCAGATAAGTTGATGAGTTTTGCAGATGACAACTATGATAGCTATTCTGAGAGCTGTGGTGTAGAGGAGTCTGGGGAATCTGAAGTTTATGATCCTGAGCAAGAAGAAGAGGATGCCAATGATGAAGTGATGGGACCGAGGAAAGAAATTGAGAGACTAGGTGAAGAGAACAAAGACCAAATTAAGAAATATAACACTTGTGATGAAGAAATGATGTTGAGGGAAGAAATAGAACAACTTCGAAAAGAGAATAGAGCGCAGAATGATGAACTCAGGCAGAAGGGTACCATTTGTGGTGAAGTAATGATGTTGAGAGAAGACGTTGAACGACTTAGAAAAGAGAATAGAGCACAGAAGGATGAGCTCGAGCAGAAAGGTAGCATTTGTGGTGAAGTAACGATGTTGAGGGAAGAAATAGAAAGACTCGACAAAGAGAATAGAGCACAGAAGGACGAACTCAACAAGCAAGGGAGCATTTCTAGTGAAGTAATAATGTTGAGAGAAGAAATAGAACAACTTAGAAAAGAGAATAGAGTGCTGAATGATGAACTCAAGCAGAAAAGTACCGATGGTGGTGGAGTAATGATGTTAAGGGAAGAGGTAGAAAGAGTCAGAGAAGAGAATAGGGGACAGAAGGACCATCTCAAGCAAAAAGACCAAGAGAAGATAGAGGTGATTAGACACCTTAGTTTAGCTATAGATGTCCTTAAGCAGGAGAATGTAAAGATGAGAAGCTTCATTGCTAAGGAATCTTCCAAATGGAAGAACCCATTTGAGTTAAACAAACTCATGAGATCATTATCGGGAAAGTTGTTTAATCACTTTAATGGATTTGCAAAGTTTAATCACCCTAGTGTTGTAGCTCTCTAG 1269 0.409 MRHGELKNESPVEFNQVFGVGDIKDKMAEMKKNEPSHWWWLESHSNTRRSPWLQSTLAELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQVTGIRNQKTGGSPFSPLKHHQSDKLMSFADDNYDSYSESCGVEESGESEVYDPEQEEEDANDEVMGPRKEIERLGEENKDQIKKYNTCDEEMMLREEIEQLRKENRAQNDELRQKGTICGEVMMLREDVERLRKENRAQKDELEQKGSICGEVTMLREEIERLDKENRAQKDELNKQGSISSEVIMLREEIEQLRKENRVLNDELKQKSTDGGGVMMLREEVERVREENRGQKDHLKQKDQEKIEVIRHLSLAIDVLKQENVKMRSFIAKESSKWKNPFELNKLMRSLSGKLFNHFNGFAKFNHPSVVAL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01193 422 Pfam KIP1-like protein 38 111 IPR011684 GO:0003779
Cca02g01193 422 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 36 117 IPR011684 GO:0003779
Cca02g01193 422 MobiDBLite consensus disorder prediction 148 177 - -
Cca02g01193 422 Coils Coil 265 289 - -
Cca02g01193 422 PANTHER PROTEIN NETWORKED 4A 36 308 - -
Cca02g01193 422 Coils Coil 234 261 - -
Cca02g01193 422 PANTHER PROTEIN NETWORKED 3A-RELATED 36 308 - -
Cca02g01193 422 Coils Coil 296 323 - -
Cca02g01193 422 PANTHER PROTEIN NETWORKED 4A 273 421 - -
Cca02g01193 422 PANTHER PROTEIN NETWORKED 3A-RELATED 273 421 - -
Cca02g01193 422 Coils Coil 327 354 - -
Cca02g01193 422 MobiDBLite consensus disorder prediction 157 173 - -
Cca02g01193 422 Coils Coil 203 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01193 Cca-Chr2 29535860 29539572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01193 - - gsj:114372579 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01193 02 29535860 29539572 Cca02g01193 02 29535860 29539572 ECH
Cca03g02653 03 47879507 47883036 Cca02g01193 02 29535860 29539572 PCT