Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01166 ATGAATCTCTTCAAATCCGTTTTCTTAGACGAACCGGATCCTCCCCGACCCGAATCCGGATCCAACAATGCGCCGCGAGACAAAGACCCGGATCCAGATTCCCCGCCCCGATCCACCACCACCGATTCCGCCGCCGCAGACGGTTGGAACTTCGGCGGCCTCTTCAAAACCCTCTCGGCCAAATCGGAATCCATAATCGAGACCTACCGTCGCGATCTGCAGGAATTCGGCACCGGTTTGAAGAAAGAGATTGAGGTCGCGCAGGGTTCTCTCGGCACCGTGGGCCACGTCATCGACGAGTTCGGAAACACCGTCGTCAAGGGAACGGCTCAGATCATATCTCAAGGTAAGGACGCCATCCTCGCCGTTGATCTCGATTCCGATTCCGATAACAATAGCGCCAATAGGAAGAGCTTCGATTCAAATTCGGTGCGGTATAGTAGGTTCGACGCTCAGGTTCGTGCCATTCAGGGTGACGTTAACACTTACTCCGAGGAGCCAGAGGATTTGAATGAGTTCAACGAGTGGAAATTAGGGTTTTCCTTGGAGGGGAAGAGTGAGGAAATGGAGGGATTTTTAAGAGAGAATGATGTTATGGAGAGTGTTTACAAAAAGGTTGTTCCGAATAGTGTGGATCACGAGACTTTCTGGTGTAGGTATTATTATAAGGTTTATAGGCTCCAGAAAGCTGAAGATGTTAGGGCTAGGCTTGTGAGTGGAATTTCTGGGGATGAGGATTTGAGTTGGGAAATTGAAGATGATGATGATGGTGAGAATGTAGGTGAAGCTAAACCTGTGGTTGTGAATAAAGAGGTTGGTGGTGGTGAAAATGTGGATACCAAGTTACATGTTGGAAGCAATGAGGGGGGAACAAAGAAATTGGATGTGGAAGAGGAGTCAAAAGTAGAAAAGAGAGAGAATTTATTGCAAAGTGAGGAAGTTGGCAACAACATGGATAAGTCTGTTGAGGAATCTGGATTTGTTGGTGAGACGGGTGGTGGAAGTAGGGAAATTAGTGAAGAGGCAGGAGTTGCTGAGGCATCAAAGTCAAAAGTGGATGATGCTGTAGGCAAGAATGATTCTACAGCTGAATCTGATGAGAAGGTGGTAAAGGAAAAGGAGGGTGGTGATGAGAAATCTTCCGGTAAGAATAATGAGAATAATGAGTCTTCGGCTTCAGCGGTTGAAATTCAGCACTCAGCGAATGAGGAAGAGGAGGACCTTGGGTGGGATGATATTGAAGATCTTAGCATGATTGATGAAAAGAAAGCAACAACACATAGTGGTAGCACAAGCAAAGTTGATTTGCGGAAGCGGCTTAGTGCTGCGGAAGAGGAGGAAGACTTGAGTTGGGACATTGAAGATGATGATGAACCTGCTAAGGCTTGA 1389 0.4716 MNLFKSVFLDEPDPPRPESGSNNAPRDKDPDPDSPPRSTTTDSAAADGWNFGGLFKTLSAKSESIIETYRRDLQEFGTGLKKEIEVAQGSLGTVGHVIDEFGNTVVKGTAQIISQGKDAILAVDLDSDSDNNSANRKSFDSNSVRYSRFDAQVRAIQGDVNTYSEEPEDLNEFNEWKLGFSLEGKSEEMEGFLRENDVMESVYKKVVPNSVDHETFWCRYYYKVYRLQKAEDVRARLVSGISGDEDLSWEIEDDDDGENVGEAKPVVVNKEVGGGENVDTKLHVGSNEGGTKKLDVEEESKVEKRENLLQSEEVGNNMDKSVEESGFVGETGGGSREISEEAGVAEASKSKVDDAVGKNDSTAESDEKVVKEKEGGDEKSSGKNNENNESSASAVEIQHSANEEEEDLGWDDIEDLSMIDEKKATTHSGSTSKVDLRKRLSAAEEEEDLSWDIEDDDEPAKA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01166 462 MobiDBLite consensus disorder prediction 272 462 - -
Cca02g01166 462 MobiDBLite consensus disorder prediction 286 310 - -
Cca02g01166 462 ProSiteProfiles BSD domain profile. 176 228 IPR005607 -
Cca02g01166 462 MobiDBLite consensus disorder prediction 415 446 - -
Cca02g01166 462 PANTHER SYNAPSE-ASSOCIATED PROTEIN 86 456 - -
Cca02g01166 462 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 86 - -
Cca02g01166 462 SMART wurzfinal6 176 228 IPR005607 -
Cca02g01166 462 Pfam BSD domain 176 232 IPR005607 -
Cca02g01166 462 Gene3D BSD domain 138 239 IPR035925 -
Cca02g01166 462 PANTHER PROTEIN, PUTATIVE-RELATED 1 86 - -
Cca02g01166 462 PANTHER PROTEIN, PUTATIVE-RELATED 86 456 - -
Cca02g01166 462 SUPERFAMILY BSD domain-like 145 233 IPR035925 -
Cca02g01166 462 MobiDBLite consensus disorder prediction 342 384 - -
Cca02g01166 462 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01166 Cca-Chr2 29158871 29160560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01166 - - gmx:100796508 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01166 02 29158871 29160560 Cca02g01166 02 29158871 29160560 ECH
Cca03g02078 03 41033658 41034945 Cca02g01166 02 29158871 29160560 PCT