Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01156 ATGGCGCCTAGCCGCAGAAAGGGCCACAGTAAggcggcggcggcggcggccgcTTGCCACCAGTGGAAGGTGGGCGATCTTGTACTTGCCAAAGTCAAGGGCTACCCTGCATGGCCTGCCACGGTCAGTGAGCCGGAGAAGTGGGGTTACTCCATTGATTGGAAGAAAGTGCTTGTTCACTTCTTTGGAACCCAACAAATTGCATTCTGCAATCCTGCAGATGTGGAAGCATTTACTGAGGAGAAAAAACAGTCTCTTCTTGGAAAACGTCATGGAAAGGGTGCTGATTTTAGTCGTGCTGTACAGGAGATAATTGAAAGTTATGAGAAATTAAAAGAAGAGCCTCAGCTTGGTGAAATTGGTTCTGCTGGTGATGTTGCTAATGCAGATGTTTCAAATCCTGTTAACTCATCTGCCAAGGATCAAGCTGTTGCTCATGAGTTGACACATACATTACCAATAGATACATCAAATTCTATCAACAAACAAGAGGTGGGTTGTGCCACTGAGGATGAGTCAGCTGCTGTATTTAAAGATGAATCTAATAATACGGAGGCATTGTTGGGGGAGCCTACTGATAAGACTGCTGCAGTAAAATCACCTAAGCCAGTTACTTACTCTTCTCGAAAAAGATCTGTGGGTGACTTGTGCCTGCCAGGCTGTGTAACAAATAGTTACACCTCAGTACGGAGGTCTAGAAGTTCATCACGTGCCCAAAACTTTGTGTTGCCTTGTAATGACGGTGGAAAGAGTGCTGGTGACCCATCAACTACTGCAACCCAGAGTGCACCTACAAGAAGGAATAAACGTGTTAGGAAGAAGTCACCTGATCTTTCTGGCTGTAACAATTTTGAATCATCCGCTTTTGTCTCCAATGGCAGCATGGAGGACAATAGTTCTGAAATTATCACAACTGATTCGGATACATTTAGCTTGAATGATGGTAGTACAATAGATTCAAATTTTAAACTTGAACTTGCTGAAACTATTGATTGTCCAGAACTTGAGTTGAATAAAGGGCTTGATCTCGAAATAATATCTGTAGTCAATAAGAAGAAAAGAAAACCGAATAGAAAGAGGGCTGCTAATGATGCTTCTATGCCAATCAGTAGGCCAGAGGAGGAGACTTGTGTGCAGAATGGCAGTCAAAGTTCACAGAATAATTGTGGAAATTCAAAAGAAAGATGCTTTGAACAAGATGGAGATGAGCACTTGCCCCTTGTGAAACGAGCAAGAGTCAGAATGGGTAAATCTTCTGTGGAAGCAGAACTTCATAGCACTCAACAATCCCAAGAAAAAAACTGTAAGGAAGATACTAACTCAGTGCATCAGATGATCACATCCTCAAATTGTGAGAATAGTAGCCCTGTTGATGGAGACTCATCTGTGCTGAATGGAGCTATAGATAACGTTTCTCCAAAAGTATCAGTTCCATGTTCCAACACTCAGATTTGTAATACTAGGAAAGATAAAACCTTCAGCTCTGTGGACGGTGAAGCTGCTTTACCTCCATCTAAACGCCTCCATCGTGCTTTAGAAGCCATGTCAGCTAATGCTGCTGAAGAAGGTCAAGTTCATATGGAAGCATCATCCTCCATAATGACATCAAGTGGTACGTGTTGTATATCTACTGTCAATAGATGTCCGAATATGCCCATTAATAATGAAGAAGGTAATGGTTTAGGGGCGCAAAAGTCTGATACTTGCAACATTGATTCTTCTCATATCAATGTGTTTAGCTCAACCAGTTCAAATCCATTGATTTCAACAGAGAATGAATCATCTATCCAAGTGGATAAGCAGTTGACCAAGATACAACAACATGAAACTGGCAAGGATGTTCTCCCAGATGCTACAGATGAAGTTGGTGAAGAGCTTAGTGATCATTTGGCTTATCAGACAGCTAAAGCAGATTTAAAAATTCAGTCACATCGACAAATTTCTCCTAATCTTGATTCAAAATGTTGTGATGTTGGAAGCAATCAAGATTTGCCAGATCCAATATCACCACCAAATGATGAAGACAACATTAGAACTCTGAAACATTCAAATGCAGCATCTGATGCATTGGGAAACAACGAAATAAGCCTTGACCCAGGAATGGGTGTGAATGAAAATTACACTTTTTTACCTCATAATGCTGATGTGCTTCGTAATGGGGTTGCTGTATGTGAGGATACAGGGTGCTTGGAGAAGCCAGCAGTTGTTGATATTGGCACAGCAAATGATATGAGAGAGGTTGTGAAAGAGGTAAAATGTAAAGGACCAGAAGAGGATATGAATTCTGTCTCAACATCTGATAACTGTTTGGATGTAAAGGGTATTTCAGACACTCGGTCAAGTCCATCCTTGACAGATGGGGAAGATTGCATTCCTCAAGGATCACCTCCAACTACGTCTGTATGCAATGTTTCAACATCAGACAGTAGTAATATCCTTCACAATGGAAGTTGTAGCCCTGATGTACATTTACACCAGAAGCAAACTTTATCTGGTCCTGTTGATGGAAGTAAAGAAGGGTACGTGGCAACTCAACAATCAAGATGGATGGGGAAGTCAACTGAAGCAGGGCGTGCAGCTTTGTTGTACTTCGAAGCGATGCTTGGGACATTGACAAGGACAAAGGAAAGTATTGGTCGGGCAACACACATAGCTATTGACTGTGCAAAGTTTGGTATTGCAGCTAAGGTCATGGAAATTCTTGCCCATAGTCTGGAAATGGAGTCTAGCCTGCATCGGAGGGTGGATTTGTTTTTTCTTGTAGACTCTATTGCACAGTCTTCTCGTTGTTTAAAAGGTGATGTTTGTGGTGTGTATTCATCTGCTATTCAAGCAGTCCTTCCACGACTATTATCTGCTGCTGCTCCTCCTGGAAATACTGCTCAAGAAAACCGTAGGCAGTGTCTCAAGGTTTTAAGGCTGTGGTTGGAGAGAAGAATCCTACCAGAATCCGTTATTCGCCGTCATATCCGGGAACTGGATTTGTATAGCAGTTCAGCTTCTGCAGGTATCCATTTGCGGCGATCATTGAGAACAGAGAGGGCTTTGGATGACCCTGTTAGAGAAATGGAGGGTATGCTTGTTGACGAATATGGAAGTAACTCCACTTTTCAGCTGCCTGGGTTCTTCATGCCCCGAATGCTTAAGGATGAAGATGATGGGGAAGGGAGTGATTCTGATGGCGGGAACTTTGAGGCTGTCACGCCTGAGCATGCTTCTGAAGTACATGAAATGACTTCTGCAAAACACAGGCATATCTTGGAAGATGTTGATGGTGAACTTGAAATGGAAGATGTGGCTCCCTCTAGTGATGTTGAAATAAGTTCAATTTGTAATGTTGATAGAGGAAATGCAGAGCAGTTTGAGAAGAATCTGCCTGTGTCCGTTGCTCCTCCACTTCAGGATTTAATTCAAAAGATTATACCGTTTCACAGACTCTGA 3441 0.4194 MAPSRRKGHSKAAAAAAACHQWKVGDLVLAKVKGYPAWPATVSEPEKWGYSIDWKKVLVHFFGTQQIAFCNPADVEAFTEEKKQSLLGKRHGKGADFSRAVQEIIESYEKLKEEPQLGEIGSAGDVANADVSNPVNSSAKDQAVAHELTHTLPIDTSNSINKQEVGCATEDESAAVFKDESNNTEALLGEPTDKTAAVKSPKPVTYSSRKRSVGDLCLPGCVTNSYTSVRRSRSSSRAQNFVLPCNDGGKSAGDPSTTATQSAPTRRNKRVRKKSPDLSGCNNFESSAFVSNGSMEDNSSEIITTDSDTFSLNDGSTIDSNFKLELAETIDCPELELNKGLDLEIISVVNKKKRKPNRKRAANDASMPISRPEEETCVQNGSQSSQNNCGNSKERCFEQDGDEHLPLVKRARVRMGKSSVEAELHSTQQSQEKNCKEDTNSVHQMITSSNCENSSPVDGDSSVLNGAIDNVSPKVSVPCSNTQICNTRKDKTFSSVDGEAALPPSKRLHRALEAMSANAAEEGQVHMEASSSIMTSSGTCCISTVNRCPNMPINNEEGNGLGAQKSDTCNIDSSHINVFSSTSSNPLISTENESSIQVDKQLTKIQQHETGKDVLPDATDEVGEELSDHLAYQTAKADLKIQSHRQISPNLDSKCCDVGSNQDLPDPISPPNDEDNIRTLKHSNAASDALGNNEISLDPGMGVNENYTFLPHNADVLRNGVAVCEDTGCLEKPAVVDIGTANDMREVVKEVKCKGPEEDMNSVSTSDNCLDVKGISDTRSSPSLTDGEDCIPQGSPPTTSVCNVSTSDSSNILHNGSCSPDVHLHQKQTLSGPVDGSKEGYVATQQSRWMGKSTEAGRAALLYFEAMLGTLTRTKESIGRATHIAIDCAKFGIAAKVMEILAHSLEMESSLHRRVDLFFLVDSIAQSSRCLKGDVCGVYSSAIQAVLPRLLSAAAPPGNTAQENRRQCLKVLRLWLERRILPESVIRRHIRELDLYSSSASAGIHLRRSLRTERALDDPVREMEGMLVDEYGSNSTFQLPGFFMPRMLKDEDDGEGSDSDGGNFEAVTPEHASEVHEMTSAKHRHILEDVDGELEMEDVAPSSDVEISSICNVDRGNAEQFEKNLPVSVAPPLQDLIQKIIPFHRL 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01156 1146 CDD HDGF_related 20 107 IPR035496 -
Cca02g01156 1146 SMART PWWP_4 22 79 IPR000313 -
Cca02g01156 1146 Pfam PWWP domain 25 108 IPR000313 -
Cca02g01156 1146 Gene3D - 862 1000 IPR008942 -
Cca02g01156 1146 Gene3D - 13 117 - -
Cca02g01156 1146 MobiDBLite consensus disorder prediction 251 265 - -
Cca02g01156 1146 MobiDBLite consensus disorder prediction 372 392 - -
Cca02g01156 1146 MobiDBLite consensus disorder prediction 233 280 - -
Cca02g01156 1146 SMART 558neu5 863 994 IPR006569 -
Cca02g01156 1146 MobiDBLite consensus disorder prediction 373 392 - -
Cca02g01156 1146 ProSiteProfiles PWWP domain profile. 24 81 IPR000313 -
Cca02g01156 1146 Pfam CID domain 864 987 IPR006569 -
Cca02g01156 1146 SUPERFAMILY Tudor/PWWP/MBT 19 116 - -
Cca02g01156 1146 PANTHER PWWP DOMAIN PROTEIN 1 1136 - -
Cca02g01156 1146 MobiDBLite consensus disorder prediction 1048 1076 - -
Cca02g01156 1146 ProSiteProfiles CID domain profile. 856 997 IPR006569 -
Cca02g01156 1146 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01156 Cca-Chr2 28968807 28982538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01156 - - gmx:102664053 1764.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01156 02 28968807 28982538 Cca02g01156 02 28968807 28982538 ECH
Cca03g02091 03 41176979 41190125 Cca02g01156 02 28968807 28982538 PCT