Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01117 ATGAGAGATGAGAACTCGAAGAAAAGCAAGCTTTCATGGCCCAAAACTTTGGTCAAGAAGTGGTTCAATATTAAGAGCAAAAACGAGGACTTTCAGGCTGATGATGTCCTCTACGCAGGTGTCAATCAAGAGTGGAGGAGCAACTGTTCACAGAGGGAGGAATGCACTGTCAAGAAAAGCAAAACAGAGAGAGCGAAGAGGAGGCACTCAGATAGAATGCGGCGAGGTAAGATTGACCATGATGCAGCTCAGGTTACAGATGTGTATAACTATAGAATCTTTGCTGCCACTTGGAATGTAGCTGGAAAACCTCCTCCCAGTTACTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAGGAAATTGTACCTCTCAATGCTGGTAATGTTTTGGGGACAGAAGACAATGGCCCTGCCAGAAAGTGGCTAGCTCTTATTAGGAAGACCCTAAACAGTCTTCCTGGAACAAGTGGTGAATGCCACACCACTTCACCACTTCCTGACCCTATTGTAGAGTTGGATGCTGATTTTGAGGGATCAATGAGGCAGAAGGCAACCTCATTCTTCCATCGCCGGTCGTTCCAATCATTGAGTCATAGTATGAGGATGGACAATGACATGTCACTACCACAAGCATGCCTTGATCGCCGTCTCAGCGTCTGTGATAGAATGATGTTTGGTCACAGGACAAGTGACTATGACCCCAATTATAGATGGGCTTCCTCAGATGATGAAAATGGCCCTGGTGACTCCCCAGTTGTGACACAATATTCACCAATGTCATATAGAGGCTACTTCTCCATGGAGGACAGGGATAGACAGACAGGGCACTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTTGGGATATTTCTAACAGTTTGGGTGAAAAGTGATATTAGAGATGATGTTCACAACATGAAAGTGTCTTGTGTTGGCAGAGGGCTAATGGGGTATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCGTCTGTAGTCATTTGACTTCTGGCCAAAAGGAAGGCGACGAGCTAAGGAGAAATTCTGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCGGGTTCATGGCATGGGTGATGAGAGTTCTCCTCAGACAATTCTGGATCATGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATAATTGGAAGGCTCTGTTGGAGAATGACCAGGCAAGATACTATCTGCATATTGAGCAGAGACAAGGTCGTGTCTTTGAAGGATGGAATGAGGGGAAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCAGACAGGTATGCAGGCGATGAAAGACAATCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATATTGTGGTATGGAAGAGGCCTCCGCCAACTATCTTATGTTCGTGGGGAATCAAGATTCTCGGATCATAGACCGGTTTATAGCTTGTTTCTGGCTGAAGTCAAGTCTGTTGGTCGTAACAGAATCAAAAAATGCTCTAGTTGCTCTAGTTCGAGGATTGAAGTAGAAGAGTTGTTGCCTCATTCACATGGCTACAAAATAGCAAGTGTACAATACAAGGTGGGCAATGCTCTGGGAAATTCTAGCCCCAACGGTGATGTTCACATTCTGTTGCTCTCACAGTCCCAAATAAGGTTGTCCTTTGCTTTCTCTCCTTTTCAAATCTTCTCTAGAATTAATTATTTTATTTATTTTTCCCTAAACCTCCTTGTTGCAGCTGCAGTGTTTGGCATATTAATTAATAACTCTGACTCAAATGCAAATAGCATCTCAATTCTCATCGACAAGGATCATAAAAAGAATTACCACCATGAAGGGTACTCATTGCTTGTATTAGAAAAGATATGTGCAAGTTCTGACGTATATGAAGCTTCTTTTCTCGTGGCAGCTAATGATTTCACTGAGAACCATTAA 2046 0.4282 MRDENSKKSKLSWPKTLVKKWFNIKSKNEDFQADDVLYAGVNQEWRSNCSQREECTVKKSKTERAKRRHSDRMRRGKIDHDAAQVTDVYNYRIFAATWNVAGKPPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTTSPLPDPIVELDADFEGSMRQKATSFFHRRSFQSLSHSMRMDNDMSLPQACLDRRLSVCDRMMFGHRTSDYDPNYRWASSDDENGPGDSPVVTQYSPMSYRGYFSMEDRDRQTGHSRYCLVASKQMVGIFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFVCSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHGMGDESSPQTILDHDRIIWLGDLNYRIALSYRAAKALVEMHNWKALLENDQARYYLHIEQRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERQSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSLFLAEVKSVGRNRIKKCSSCSSSRIEVEELLPHSHGYKIASVQYKVGNALGNSSPNGDVHILLLSQSQIRLSFAFSPFQIFSRINYFIYFSLNLLVAAAVFGILINNSDSNANSISILIDKDHKKNYHHEGYSLLVLEKICASSDVYEASFLVAANDFTENH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01117 681 Gene3D Endonuclease/exonuclease/phosphatase 69 205 IPR036691 -
Cca02g01117 681 Gene3D Endonuclease/exonuclease/phosphatase 259 551 IPR036691 -
Cca02g01117 681 SUPERFAMILY DNase I-like 80 537 IPR036691 -
Cca02g01117 681 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 563 IPR045849 GO:0004445|GO:0046855
Cca02g01117 681 Pfam Endonuclease/Exonuclease/phosphatase family 96 514 IPR005135 GO:0003824
Cca02g01117 681 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 3 563 - -
Cca02g01117 681 SMART i5p_5 225 529 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01117 Cca-Chr2 28459797 28463763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01117 292 494 Acyl Lipid Metabolism Gene Families AT1G05630 29.515 1.28e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01117 - - gmx:100797409 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01117 02 28459797 28463763 Cca02g01117 02 28459797 28463763 ECH
Cca03g02144 03 41964324 41968469 Cca02g01117 02 28459797 28463763 PCT