Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00989 ATGTTCAATGGAGAAAGTCAATGTTGGGTTCTCATCTTCTGGATTCTAATAAAGGTTAACTCAGTGCAGCTTTGTAAATTGTTGAGCATGTCCGGCAGCAAGGTGAAGGGCATTCTTAAATACATTTCTCAGATATTTGATACTGATAAAGAACAAGACATACAGATTGGATATCCGACGGATGTAAAACACGTGGCCCATATAGGGTGGGATGGTCCCTCTGTAAATTCTCCCAGCTGGATGAACGAGTTTAAAACTTCTCCCTCTCCGGGGTTGCCTGGAGATGTTCAAAATAGAGGACACGACCATACAGCCAAAAGGCACTCCGAAGATACGAGGAGAAGAACAACTCGGGACTCGCCGGAGTTACCACCCAAGGCATCGAAAAGGCAGTCAACGGGTGGAGTGACGGAGTCTCCGACGAGAGAAAGGTCAAACAAACCGAGGCAACCAAGAAAGTCAAACAGGCCCAAAGACGAATCCAACCCGACCCGAATACCCGTACCCGCAGACCCGTTCCCACCCTCGGCGGTACCCGATATTCCTAAAAAGTCTCGTCGGCAGAAGTCAAAAGAGAGTTCTAGTGGTGGGTCCGCCAAATTGAGATCCAAGGCCCAGCCCAGTCCCGACTCTGGATCTCCGACCCAATCCAAGACTAGGAACAAACCAAGGTCCTTTGAAGAAAATGAAGAGGATATCATTGTATAA 708 0.4802 MFNGESQCWVLIFWILIKVNSVQLCKLLSMSGSKVKGILKYISQIFDTDKEQDIQIGYPTDVKHVAHIGWDGPSVNSPSWMNEFKTSPSPGLPGDVQNRGHDHTAKRHSEDTRRRTTRDSPELPPKASKRQSTGGVTESPTRERSNKPRQPRKSNRPKDESNPTRIPVPADPFPPSAVPDIPKKSRRQKSKESSSGGSAKLRSKAQPSPDSGSPTQSKTRNKPRSFEENEEDIIV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00989 235 ProSiteProfiles CRIB domain profile. 56 69 IPR000095 -
Cca02g00989 235 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC11 32 223 - -
Cca02g00989 235 MobiDBLite consensus disorder prediction 126 141 - -
Cca02g00989 235 MobiDBLite consensus disorder prediction 194 220 - -
Cca02g00989 235 MobiDBLite consensus disorder prediction 79 235 - -
Cca02g00989 235 MobiDBLite consensus disorder prediction 99 125 - -
Cca02g00989 235 MobiDBLite consensus disorder prediction 142 160 - -
Cca02g00989 235 CDD CRIB 54 87 - -
Cca02g00989 235 Gene3D CRIB domain 49 87 IPR036936 -
Cca02g00989 235 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 32 223 IPR044510 -
Cca02g00989 235 MobiDBLite consensus disorder prediction 221 235 - -
Cca02g00989 235 SMART PBD_5 56 87 IPR000095 -
Cca02g00989 235 Pfam P21-Rho-binding domain 55 87 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00989 Cca-Chr2 26214107 26216100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00989 - - vun:114192631 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02224 03 43040766 43043198 Cca02g00989 02 26214107 26216100 PCT