Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00959 ATGGCTTCAGATTCCAATCCTAACCTTAGAATCACCATTGAAAACAACCCCCCCGAGTCACGCCTAGCCGAATTGAACATCAAGGGTTGGCCCAAATGGGGTTGTTCTCCAGGGAAGTACCAATTGAAATTTGATGCTGAAGAAACATGCTACTTGTTGAAAGGGAAGGTGAAGGCATATGCAAAAGGGTCATCAGAGTTTGTAGAGTTTGGTGCTGGAGACCTTGTGACCATCCCAAAGGGACTCAATTGCACTTGGGATGTGTCAATTGCTGTGGATAAGTACTACAAATTTGAGTCACcttcttcttcttcttcttcttcttAG 327 0.4159 MASDSNPNLRITIENNPPESRLAELNIKGWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYAKGSSEFVEFGAGDLVTIPKGLNCTWDVSIAVDKYYKFESPSSSSSSS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00959 108 Pfam EutQ-like cupin domain 23 96 IPR008579 -
Cca02g00959 108 PANTHER OS04G0445200 PROTEIN 3 105 - -
Cca02g00959 108 SUPERFAMILY RmlC-like cupins 24 88 IPR011051 -
Cca02g00959 108 CDD cupin_TM1112-like 30 98 - -
Cca02g00959 108 Gene3D Jelly Rolls 2 98 IPR014710 -
Cca02g00959 108 PANTHER RMLC-LIKE JELLY ROLL PROTEIN-RELATED 3 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00959 Cca-Chr2 25741014 25741922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00959 - - gmx:100500522 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00959 02 25741014 25741922 Cca02g00959 02 25741014 25741922 ECH
Cca03g02266 03 43538603 43539339 Cca02g00959 02 25741014 25741922 PCT