Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00917 ATGATTAACCAAAGTGAAGGAAGGACTAATAATAAACACTCTCTTTTTCATACTTTCATAACTCCTCTCTCCCTCTCATCACTTTCACTCAAACTCAAACCCCATATTTGTCAATCCTCTTGGAGAACATCAATGAGAACAGAGTTGAAGAAGAAAATTTCCAAGTCTTCGTGGCCAAAATTTGATGTAAGAAAGTGGCTCAATATAAGGAGCAACCATGACAAGTTTCACTCAGATTACTCTCTAGCAGAGGGGTGGCTAATGGACTCCACAAATGCATTGAAACATTCGGTACCAGAGAAGGAGGCGCCATCTCTCACTGACATTGACACGCTCACCCTTAGGATGTTTGTGGGGACGTGGAATGTGGGAGGGAAGTCCCCGAACGAGGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACCAGCTGATATCTATGTCATTGGGTTCCAAGAAATTATACCTCTAAACGCAGGGAACGTGCTTGGGCCAGAGGACAGTGGCCCAGCAGCGAAGTGGCTGACCCTTATTCGTGAATCCTTGAACTCTAACACATGCTCCAGCGGAGAAACTTCTCCTACATCGTCTTTTACTACTACAAGTAAACAAAAACGCTATTATTGCCTAGCAGCAAGTAAACAAATGGTGGGTATCTTCTTGTGCGTGTGGGTACGTGCTGATCTTTACGACCATGTCACCAATTTAAAAGTGTCTTGCGTTGGTAGAGGCATCATGGGCTATCTTGGAAACAAGGGTTCAATATCAATTAGCATGACACTGTACCACACAACGTTCTGCTTCGTTTGTACACACTTGGCCTCCGGAGAGAAAGATGGTGACGAGGTGCGAAGAAATTTGGACGTCTCGGAGATATTAAAGAAAACTAAATTTTCTCATTCATTCAAATCTCTTGGTCAACCACTCCCTCCTGAAAGCATATTGGAACATGATAAGATTATTTGGCTTGGGGATTTGAATTATCGCCTTGTTGCTGGTTACGATGATACACTTGAGCTACTGAAGAAGAATGATTGGCAGGCACTATTAGAGAAAGATCAGTTAAGGATAGAGCGGAGAGCTGGTCGAGTATTCAAAGAATGGAAGGAAGGGAAGATATATTTTGCTCCAACTTACAAATACTTATTTGATTCTGACCAATATGTTGCTCAAACCAACAAGTCCAAGGAAAAACGACGAACTCCGGCTTGGTGTGACCGAATACTGTGGAAAGGTGAAGGCGTGGAGCAGTTATGGTATGTGCGAGGAGAGTCGAAATTCTCAGACCACAGGCCAGTGTATTCACTGTTCTCGGTGGGGGTGACATGCAAGAAGCTAAGCCCCTCAATTAGGTCTTGTCCCTTGTCATCATCATCTTGCTTTGCTAAAGTCCAGGCAGAGGAACAGCTCTTGTTACTCACCAGGGCACAACAAAGACACCACACCTGCACGGTTCTGACTTAG 1464 0.4413 MINQSEGRTNNKHSLFHTFITPLSLSSLSLKLKPHICQSSWRTSMRTELKKKISKSSWPKFDVRKWLNIRSNHDKFHSDYSLAEGWLMDSTNALKHSVPEKEAPSLTDIDTLTLRMFVGTWNVGGKSPNEGLNLRDWLMLPSPADIYVIGFQEIIPLNAGNVLGPEDSGPAAKWLTLIRESLNSNTCSSGETSPTSSFTTTSKQKRYYCLAASKQMVGIFLCVWVRADLYDHVTNLKVSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKDGDEVRRNLDVSEILKKTKFSHSFKSLGQPLPPESILEHDKIIWLGDLNYRLVAGYDDTLELLKKNDWQALLEKDQLRIERRAGRVFKEWKEGKIYFAPTYKYLFDSDQYVAQTNKSKEKRRTPAWCDRILWKGEGVEQLWYVRGESKFSDHRPVYSLFSVGVTCKKLSPSIRSCPLSSSSCFAKVQAEEQLLLLTRAQQRHHTCTVLT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00917 487 Gene3D Endonuclease/exonuclease/phosphatase 94 454 IPR036691 -
Cca02g00917 487 SMART i5p_5 112 447 IPR000300 GO:0016791|GO:0046856
Cca02g00917 487 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 78 475 - -
Cca02g00917 487 SUPERFAMILY DNase I-like 112 442 IPR036691 -
Cca02g00917 487 Pfam Endonuclease/Exonuclease/phosphatase family 119 430 IPR005135 GO:0003824
Cca02g00917 487 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 78 475 IPR045849 GO:0004445|GO:0046855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00917 Cca-Chr2 24963496 24969582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00917 113 451 Acyl Lipid Metabolism Gene Families AT1G65580 31.701 1.86e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00917 - - vra:106771110 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02301 03 43944937 43949977 Cca02g00917 02 24963496 24969582 PCT