Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00558 ATGGCAAGGGTGTCGACAGATTCTCTAATTATTGGGAGAGTCATAGGAGATGTTCTTGAATCTTTCACCCCAACCATAAAAATGACTGTAACTTTCAATAAAAAGCAACAAGTCTACAATGGCCATGAGTTCTTCCCTTCCACAGTCACCACAAGGCCAAGGGTTGAGATTGGAGGAGGTGATATGAGATCCTTCTTTACACTGATTATGACAGACCCGGATGTCCCTGGACCTAGTGATCCTTATCTGAGAGAGCATTTGCACTGGATGGTGACAGACATTCCAGGCACCACAAATGCCTCATTTGGCAATGTGTTGGTGAGCTATGAAGTGCCAAAGCCTAACATAGGGATACACAGGTATGTGTTTGTCCTGTTCAAGCAAAAACATAGGCAGTGTATAACGACTCCACCTTCTTCAAGGGATCACTTCAACACACGCAAATTCTCAGCTGAGAATGACCTTGGCCTCCCTGTTGCTGCTGTCTACTTCAATGCACAGAGGGAAACGGCTGCTAGAAGACGCTAG 528 0.4545 MARVSTDSLIIGRVIGDVLESFTPTIKMTVTFNKKQQVYNGHEFFPSTVTTRPRVEIGGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWMVTDIPGTTNASFGNVLVSYEVPKPNIGIHRYVFVLFKQKHRQCITTPPSSRDHFNTRKFSAENDLGLPVAAVYFNAQRETAARRR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00558 175 SUPERFAMILY PEBP-like 13 169 IPR036610 -
Cca02g00558 175 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 66 88 IPR001858 -
Cca02g00558 175 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 4 174 IPR035810 -
Cca02g00558 175 Pfam Phosphatidylethanolamine-binding protein 51 164 IPR008914 -
Cca02g00558 175 CDD PEBP_euk 27 166 IPR035810 -
Cca02g00558 175 PANTHER PROTEIN TERMINAL FLOWER 1 4 174 IPR031114 GO:0003712|GO:0009910
Cca02g00558 175 Gene3D - 1 175 IPR036610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00558 Cca-Chr2 12239458 12240915 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00558 K06910 - gmx:100787529 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00558 02 12239458 12240915 Cca02g00558 02 12239458 12240915 ECH
Cca03g02514 03 46428257 46429947 Cca02g00558 02 12239458 12240915 PCT