Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00381 ATGGGATCCCAAACACATTCTCAGCTACCAATCGTAGACTTCACTAGCCAAAATATGAAACCGAGTACGGGTACATGGGTTTCAGCTTGTCAAGTAGTGCGTAGTGCACTTGAGGATCATGGTGGTTTCTTGGCACTCTATGACAAGGTTAGTTTGGAGACACACAACTCTACTTATTCTGCAATGGAGAATTTTTTCGACCTCTCAATAGAATCAAAGTGGAGAAAGACTACAGAAAAGCCTATATTTAGCTACTCCGGGCAGCGACAAGGGATTCCTTTATACGAATCTGTAGGTATTATGAACCCGCTAAGTTATGAGGATTGTCAGAAATACACAAATGTTGTGTGGCCCAAAGGAAATGACCTTTTCTGTGAAAGTGTCAATTCCTATGCAAAGCAACTAGTGGAATTGGACCATATTGTGAAGAGAATGGTGTTTGAGAGCTATGGGTTAGAGATGAAGAAATTTGAGTCTTTACTTGAATCAACAGATTATGTGCTCAGAGGCTACAAATATAGAACACCCCAAGTGGGTGAGACCAACGTGGGAGTGGCTCCTCATTCTGACACAGCTTTGCTAACTATATTGAATCAAAAGGTAGAAGGCTTGGGGGTCAAATTGAAGGATGAGGAATGGTTTGAGGTGGGTGTTTCACCATCGCTCTACTTGGTAATGGCTGGCGATGCAATGAGGGTTTGGAGTAATGACAGGATACGCGCTTGTGAGCACAGAGTTTTAATAAACTCAATGATAGAGAGATACTCGATTGGACTACTTTCATATGCTGCTAAGATAATGGAACCAGAAGCTGGGCTAGTTGATGAGGAACATCCTCTTCGTTATAAATCATTTGACCATTATGGATACCTACGTTTCTTTCTCACTGAAGAAGCCATCAAATCTGAATCCAGGATCAAGGCATATTGTGGTATTTGA 939 0.4164 MGSQTHSQLPIVDFTSQNMKPSTGTWVSACQVVRSALEDHGGFLALYDKVSLETHNSTYSAMENFFDLSIESKWRKTTEKPIFSYSGQRQGIPLYESVGIMNPLSYEDCQKYTNVVWPKGNDLFCESVNSYAKQLVELDHIVKRMVFESYGLEMKKFESLLESTDYVLRGYKYRTPQVGETNVGVAPHSDTALLTILNQKVEGLGVKLKDEEWFEVGVSPSLYLVMAGDAMRVWSNDRIRACEHRVLINSMIERYSIGLLSYAAKIMEPEAGLVDEEHPLRYKSFDHYGYLRFFLTEEAIKSESRIKAYCGI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00381 312 Gene3D - 1 301 IPR027443 -
Cca02g00381 312 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 269 IPR005123 -
Cca02g00381 312 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 311 - -
Cca02g00381 312 Pfam 2OG-Fe(II) oxygenase superfamily 178 257 IPR044861 -
Cca02g00381 312 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 311 - -
Cca02g00381 312 SUPERFAMILY Clavaminate synthase-like 6 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00381 Cca-Chr2 7988367 7991006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00381 8 283 Glycosyltransferase AT5G59530 24.306 7.07e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00381 - - gmx:100789342 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01909 03 38703745 38705777 Cca02g00381 02 7988367 7991006 PCT
Cca02g00381 02 7988367 7991006 Cca03g01910 03 38709514 38711512 PCT