Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02348 ATGTGGGGCACCATTGCCAATTTGAAGGAGAACCTCAACAAGATCGCCCTCGATGTTCATGATGACGACCACGACGAAATTCTCCGCGCCTACGCTGCCGGAAGCCCTACCGACGCCGACAACTCCGCCGTCTCCGATCGCCGGACTTCCCACGCCTCCGCCCATTCCAAATCCGGGATTGGCTCGCCGCTCGCTAACGGCATCGATCATGCCTCTCCTTCTCAGATAGAGCAATACAAAGCAGAAATCAAGAAACTTCAAGCATCCGAGGCGGAAATTAAAGCATTGTCAGTTAATTATGCAGCTCTGTTAAAAGAAAAAGAGGATCAGATTGTTAAATTAAATAAAGAAAATGGTTCACTAAAGCAGAATTTGGAGGCTACAAATGCTGCTCTGCATGTTTCAAGACTTGAAGGTTCTGGAGCATCTACAAATGGGACTTACACAGTTAATAGGGATCGATCACCCAATGGACAACATAAGTTCAACATGCAACGGAAAAATCGGTATGCTATAAATAATGGAGCCATGTCTGCattggaaactgatgctattcaaagtgagatggaattcaaacattcaaatttacaaggaaatCATAAGGAGCTTGCAGATTTGGTTGATGGAAATACCACAGTAGCTGTACAACATTCCCCAGATATACAAAAACTGAAGTTAGAACTAGAGCAAGAACGGGATCAATTGGTGAACATTCAGCTAAAATTCCAAGAGGAACAGAGATTGAACAAGTCTTTCCAGGAGGAGCTTAACATATTAAAGTTGGAACAAGACAAGACTTCGAAGGAGATGAGCAAAATATATTCTGAATTGAATGAGAAAGTATCAGAAATAAAGCATCTGCAATTTGAGTTGACAAGACGAGAAAATGAAGCAGGGGAGGCTGTTGATAGCTTAAAAAGACTTATCAAAACCTTAGAGAAGGAAAACACCACTCTTAAGATGGAAAAGAATGAAATTGAGTCTGCTCTCGAAAATAGCAGGAAGTCTTTCCCTGATAAAATGATGCCCGATGCTTCACATATTCAGAAAATGGATTCAAGCAATGTTGGTGATATGCCAGATCACTCCAAAAGTTTTCCAGAAAAAGAAGAAATGGAAAGATCCTTACAGAAGCTAAGTAAAGATTTGAAGGAAACACAGAGGGACAGGGACAAAGCTGTCCAGGAATTGGGCCGCCTCAAACAACATTTACTACAAAAGGAATCTGAGGAATCAGATAAAATGGATGAAGACACTAAAATCATTGAAGAGCTGCGTGATAGCAATAATTATTTAAGGGCTCAAGTATCACATCTTGAGAGAACACTGAAGCAAGCACTTACAAGTCAAGAGGAACTGAAGATGGGAAATAACAGTGAAATTCTGAAATCTAGAGAAGCCATTAATGACCTGAACAAGAAGCTTACAAACTGTATGAGCACTATAGATGCTAAAAATATCGAACTTTTAAATCTACAGACAGCTTTAGGACAGTACTATGCTGAAATTGAAGCCAAGGAGCATTTAGAAGGGGAGTTGGCCCATGCAAGAGAAGAAACAGCTAAGCTTTCTCAACTTTTGAAAGAAGCAGATCACAGAGAAGATGAATCAAGGAATGAAAAAGAAGAGCTTTTAGCCAAGCTTTCACTATCTGAGAAGGTGCAAACTGAATGGAGAAGTAGGGTAAGCAAGCTTGAGGACGACAATGCCAAATTGAGGCGTGCTGTTGAGCAGAGTATGACACGGTTGAATAGAATGTCGGTGGATTCAGACTATCTTGTTGATAGGCGCATTGTGATAAAATTACTTGTAACTTATTTTCAGAGAAATCACAGCCGAGAGGTTTTGGATCTTATGGTTCGCATGCTAGGATTCTCTGATGAGGAAAAGCAAAGGATAGGTGTTGCACAACAAGGTGCTGCAGGTAAAGGTGTTGTTCGTGGAGTTCTTGCGCTGCCTGGTCGCCTTGTTGGAGGCATCTTGGGAGGAAGTTCGCCTGAAGCAGCTGCAAATTCAGGATCTGATAACCAGTCTTTTGCAGATCTATGGGTTGATTTTCTTCTTAAGGAAACAGAAGAAAGAGAGAAGAAAGAATCATCAGGAAATACAGGTAAAGCCATGGACGATGAAAGTCCAAATACTATGTCCGCTACTCCACCATTTTCCAATCGGAGGTTTGACGCTGGAACACCATCTGCTTTTCAAATTACTCAAACTAATCAAAACATCAGTCCTCTCTCTCGTGGCTATTTTCACCATTCTGAACATTTTGATTCCGAGTTCTCAACAGTTCCTCTTACATCATCTGATGGTAAAAATAGTAGTTCAAACCCTCTTCCGAGATACTAA 2349 0.4032 MWGTIANLKENLNKIALDVHDDDHDEILRAYAAGSPTDADNSAVSDRRTSHASAHSKSGIGSPLANGIDHASPSQIEQYKAEIKKLQASEAEIKALSVNYAALLKEKEDQIVKLNKENGSLKQNLEATNAALHVSRLEGSGASTNGTYTVNRDRSPNGQHKFNMQRKNRYAINNGAMSALETDAIQSEMEFKHSNLQGNHKELADLVDGNTTVAVQHSPDIQKLKLELEQERDQLVNIQLKFQEEQRLNKSFQEELNILKLEQDKTSKEMSKIYSELNEKVSEIKHLQFELTRRENEAGEAVDSLKRLIKTLEKENTTLKMEKNEIESALENSRKSFPDKMMPDASHIQKMDSSNVGDMPDHSKSFPEKEEMERSLQKLSKDLKETQRDRDKAVQELGRLKQHLLQKESEESDKMDEDTKIIEELRDSNNYLRAQVSHLERTLKQALTSQEELKMGNNSEILKSREAINDLNKKLTNCMSTIDAKNIELLNLQTALGQYYAEIEAKEHLEGELAHAREETAKLSQLLKEADHREDESRNEKEELLAKLSLSEKVQTEWRSRVSKLEDDNAKLRRAVEQSMTRLNRMSVDSDYLVDRRIVIKLLVTYFQRNHSREVLDLMVRMLGFSDEEKQRIGVAQQGAAGKGVVRGVLALPGRLVGGILGGSSPEAAANSGSDNQSFADLWVDFLLKETEEREKKESSGNTGKAMDDESPNTMSATPPFSNRRFDAGTPSAFQITQTNQNISPLSRGYFHHSEHFDSEFSTVPLTSSDGKNSSSNPLPRY 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02348 782 Coils Coil 555 582 - -
Cca01g02348 782 Coils Coil 369 403 - -
Cca01g02348 782 PANTHER MYOSIN HEAVY CHAIN - RELATED 1 782 - -
Cca01g02348 782 Coils Coil 506 547 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 38 60 - -
Cca01g02348 782 Coils Coil 422 442 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 362 390 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 33 70 - -
Cca01g02348 782 Coils Coil 76 131 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 350 390 - -
Cca01g02348 782 Coils Coil 221 269 - -
Cca01g02348 782 PANTHER VESICLE TETHERING-LIKE PROTEIN, PUTATIVE-RELATED 1 782 - -
Cca01g02348 782 Coils Coil 295 332 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 693 728 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 761 782 - -
Cca01g02348 782 MobiDBLite consensus disorder prediction 705 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02348 Cca-Chr1 52061225 52084856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02348 - - gmx:100808518 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02348 01 52061225 52084856 Cca01g02348 01 52061225 52084856 ECH
Cca01g02348 01 52061225 52084856 Cca07g01959 07 47068234 47077241 PCT