Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02325 ATGAAGAAGTTTGTACTCAAGTTAGATTTGCATGATGACAAGGATAAGCAGAAGGCATTGAAAACGGTCTCAACTCTTTCAGGAATTGATGCGATTTCCATGGATATGAAAGAGAAGAAATTAACAGTGATAGGAACAGTGGATCCGGTAAGTGTGGTGAGCAAATTGCGCAAATACTGGCAGACAGACATAGTAGCAGTAGGACCAGTGAAGGAGCCAGAGAAGAAAGAGGACCCCAAGAAAGGAGACGGCAAGAAGGATGGAGAAAAGAAAGATGATCAAAAGAAGGAAGATGGCAAAAAGGAAGAGGGAAAGAAAGAAGAGAAGAAGGATGATGATAAGAAGAAAGAGCCACCCCTAGATCCTGTTTTGGAATGGGTAAAGGCTTATAGGGCATATAACCCCTACATGACCACACACTACTATGCTCCAAGCATTGAAGAGAATCCCAATGCCTGTGTCATTTGTTAA 471 0.4204 MKKFVLKLDLHDDKDKQKALKTVSTLSGIDAISMDMKEKKLTVIGTVDPVSVVSKLRKYWQTDIVAVGPVKEPEKKEDPKKGDGKKDGEKKDDQKKEDGKKEEGKKEEKKDDDKKKEPPLDPVLEWVKAYRAYNPYMTTHYYAPSIEENPNACVIC 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02325 156 SUPERFAMILY HMA, heavy metal-associated domain 1 58 IPR036163 GO:0046872
Cca01g02325 156 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872
Cca01g02325 156 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 156 - -
Cca01g02325 156 MobiDBLite consensus disorder prediction 69 121 - -
Cca01g02325 156 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 156 - -
Cca01g02325 156 MobiDBLite consensus disorder prediction 67 121 - -
Cca01g02325 156 Gene3D - 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02325 Cca-Chr1 51765161 51767956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02325 - - gmx:100499838 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02325 01 51765161 51767956 Cca01g02325 01 51765161 51767956 ECH
Cca07g01951 07 46919501 46922818 Cca01g02325 01 51765161 51767956 PCT