Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02290 aTGTCTTTGAATTCGATTCTTTGGTGTCATCTCAACCTGATTCCTGTCAGTGCGTTGCTTTTTTGTTGTTGTTCTATTGGTCTCTGCTCTGCAAACGATGAACTTGGAGCCACTGATGATGTCTTCACTGTTTCCAGCTTCAGCTACCCTGAGACCACCATTAGACCCTATGATTTGCGCTACATCAGAGTTGATATACCTCCATGGTTTTCTGCGGTGTCCATAGCATTGAACTCAGATGTAGACCTTGATATTGCCAGAGTTGAAAGGATTCCAAAAAGCTCACTGCCAATAATATGCTTTAGAGATGGCAGTCCTCCTCTTCCAGATGCTTTAAACACATCCTTGAAGGATTCGGCTGCCACAGGAATAAATGGTCTTGATGTCGAGCAGTGCTTTCCTATGGAGAAAAACATCACTATGAAATTGACAAACGAACAGATATCTCCAGGTGCTTGGTACATTGGTCTTTTCAATGGCATTGGAGCTACAAGAACACAATCGAAAATGATTATTCGAGGCTCAGCATACTCATTCAGTGCCAATATAAGTGTGGAAGCATGCTCAAATTCAATGATGAGGGGAGAGTTATGTAACAGTACAGTCTATCCACTTTCATGCACAGCATCTGATGTCTACAACACTATGAAGGAGACGGTGAAGAAGCCAATGATGGAAAATGTAATGAGCTGCAAAAGTAACATAGAAACGTTCTGTGTTCAAGAGGGTGTACCAGAATTGTACTCCTTGGAGATAACAAATGTTGTAGAAGAATTGACCATTATGGCCGCAAATGTTAGATTCAATACTACAGCTTCAAATAACATTTCCGGAGCAAATGATTTTAATTTAATGTGTTTTGCTCGCCATGGTGCTATTCCTTCAGAGACTTTGCATGATTATTCTGGTGATTTAAATAAAGCTCCTCTGATTATCCGTTATCCACAGATTGGTAATTTGTACATTAGTATATCACCAGTGAATGTTACAAAAAAGTTTGGAGGGACTCTGGATGACAATTTAAAAGTTTGCTATTCGATGGAATCACAAGTGCTTCAGTGCCCACTTGGGAAAGCTGGACCAAATTGCACAATGGACAGCTACACACTTCAGACAGTTCTAAGGAGAGGTCCAACCCCCTTTGAATCATATTATTTACCTGTGTCTGCTGGTGAAGGAGCATCTTCTGCAAATTTTCCTCTCGAGCCACTTTTAAACAAGTCATCAAATGCAGGAGATACTGATGAAATTTGGACTTACTTTACTTTGGATATTCCTCGTGGTGCAGCTGGACGGAATATTCACATTCGTCTGTCTGCAAATGTGAAGATCAATTATGAAGTTTATGCTAAATTTGGTGGATTGCCTTCTCTTGATAGCTGGGACTATTATTATGCTAACAGGACAAGGAGGAGTGAACAATCCATGTTTTTCATGCTATATGATTCAAGTGATGACAAAATTGATTTTTACATTATTTATGCCAGAGAAGGAACTTGGGGTTTAGGTCTAAGACATCTTGATACTAGCAGTGATTCTTTGAAAGCGCAAACTGTCATGTCTATTTCACTTGAAGGATGCCCAAAAGAATGCTCCTCTCATGGAGACTGTAAATATTCTTTTGATGCCAGTGGATTGACATCTTACAGCTTCTGCTCTTGTGATCGAAACCATGGTGGCTTTGACTGTAGCATTGAAATTGTATCACATAAAGGGCATATACTGCAATCAATTTTTCTCATTGGATCAAATGCTGCAGCCATTCTTCCTGCCTATTGGTCTCTTCGGCAGAAGGCATATGCAGAATGGATTTTATTCACGTCTAGTGGAATTGCTAGTGGGATATATCATGCATGTGACGTTGGCACCTGGTGTATATTGAACTTTAATGTTTTACAGTTCATGGACTTCTGGCTCTCTTTCATGGCTGTGGTTAGCACTTTTGTATATCTATCTACCATTGACGAAGTTTATAAGAGGGCAATCCACACAGCTGTTGCCATCCTTACTGCCCTCTTGGCTTCAACTAAGGCAACTAGATCTTCCAATATTGTTCTTGTCATTGTGATTGGAGCTGCTGGTCTTCTAATTGCATGGTTGATAGAAATCTCAAAAAAGTATAGGTCCCTCTCCTTTTCATTTGAATTATCGCTGAGTTTCCTTCAAAGCTTGCAAACTATAAAGCAATGGTTTTGTAATCTGGTCAAGACACTTTTGAGACGGTTTCGCTGGGGTTTTCTGTTGGTTGGTTTCATTACATTGGCCATGGCAGGAATGAGCTGGACATTTGAAACCAGTGCAAACTATTGGTTTTGGCATAGCTTTTGGCATGTTACAATATATACATCTTCTTTCCTCTTCCTTTGCTCAAAAGCAAATATTGTTGATGCTGAAAATTCACTCCCGGCAAGTGGAAACTATGCACTGACTCGTCAGGATTCTTTTCCAAGAGGTGATTAG 2460 0.4004 MSLNSILWCHLNLIPVSALLFCCCSIGLCSANDELGATDDVFTVSSFSYPETTIRPYDLRYIRVDIPPWFSAVSIALNSDVDLDIARVERIPKSSLPIICFRDGSPPLPDALNTSLKDSAATGINGLDVEQCFPMEKNITMKLTNEQISPGAWYIGLFNGIGATRTQSKMIIRGSAYSFSANISVEACSNSMMRGELCNSTVYPLSCTASDVYNTMKETVKKPMMENVMSCKSNIETFCVQEGVPELYSLEITNVVEELTIMAANVRFNTTASNNISGANDFNLMCFARHGAIPSETLHDYSGDLNKAPLIIRYPQIGNLYISISPVNVTKKFGGTLDDNLKVCYSMESQVLQCPLGKAGPNCTMDSYTLQTVLRRGPTPFESYYLPVSAGEGASSANFPLEPLLNKSSNAGDTDEIWTYFTLDIPRGAAGRNIHIRLSANVKINYEVYAKFGGLPSLDSWDYYYANRTRRSEQSMFFMLYDSSDDKIDFYIIYAREGTWGLGLRHLDTSSDSLKAQTVMSISLEGCPKECSSHGDCKYSFDASGLTSYSFCSCDRNHGGFDCSIEIVSHKGHILQSIFLIGSNAAAILPAYWSLRQKAYAEWILFTSSGIASGIYHACDVGTWCILNFNVLQFMDFWLSFMAVVSTFVYLSTIDEVYKRAIHTAVAILTALLASTKATRSSNIVLVIVIGAAGLLIAWLIEISKKYRSLSFSFELSLSFLQSLQTIKQWFCNLVKTLLRRFRWGFLLVGFITLAMAGMSWTFETSANYWFWHSFWHVTIYTSSFLFLCSKANIVDAENSLPASGNYALTRQDSFPRGD 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02290 819 PANTHER TRANSMEMBRANE PROTEIN-LIKE PROTEIN 18 818 - -
Cca01g02290 819 Pfam Protein of unknown function (DUF3522) 573 778 IPR021910 GO:0016021
Cca01g02290 819 PANTHER FIVE-SPAN TRANSMEMBRANE PROTEIN M83 18 818 IPR021910 GO:0016021
Cca01g02290 819 ProSitePatterns EGF-like domain signature 1. 552 563 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02290 Cca-Chr1 51277624 51285874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02290 - - gmx:100777848 1474.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01932 07 46606585 46625743 Cca01g02290 01 51277624 51285874 PCT