Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02278 ATGACTATGAGTGGCTTAATTTCCAACCGCAACTTCGGTTCCTTCCTTGCCCCAGGAAATGGATATAGATCGGGGAAGGATATATCTATTTCTGGTGTAGCTGTTGCTAAGGATCCTTTTTCAAGATGGCAGCATAAGATGTATTTGCCTTTGGAAGAGAAAATGCGAACATCTCAAAACAGAGTGGAGCCTTGTTCTCTTGTATCCCACCAGTCCAGTCAGTGCTTGAATTTTAAACTAAGGGCTAGTGGAAGAAGTTGTTGTTCCTTCCTTTCTTCAGCTCCTTATGGCAGTAACAATGTTGAACAAAGGGAAGTTTATAGACTTGGTTTGAGCAAAAGAAAGCATGCACAAACTGAGGCTGGTAAAGCAAGTAAGTTCCGTGTTAATTACAAGTCTGAGGAGTATGACATTGCAGAAACAAAGATGAAACCACTGCAATCAGCTGAAGGGACTGGGGAAGCCATTCTTCTAGAAGGAAATCTGCAGCAAGTATCACCTTGGTGGCAGCAGTTTCCTAAGCGCTGGGTTGTTGTACTGCTGTGTTTTGCAGCATTTCTGCTGTGTAACATGGATCGAGTAAATATGAGCATAGCAATACTTCCAATGTCACAAGAATTCAACTGGAACAGCGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGTTATCTACTTACTCAGATCATTGGTGGCATATGGGCAGACAAACTTGGTGGGAAGGTAGTACTAGGTTTTGGAGTTGTCTGGTGGTCAATTGCAACAGTTTTAACACCTATTGCTGCAAGACTAGGGTTGCCATGTCTGCTTATTATGCGTGCCTTCATGGGAATTGGTGAGGGTGTTGCAATGCCTGCAATGAATAATATACTTTCCAAATGGATTCCAGTATCAGAGAGAAGCAGATCACTTGCGCTAGTATATAGTGGCATGTACCTTGGTTCTGTCACAGGCTTGGCATTCTCACCTCTGCTAATCCAGAAATTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGTATCTGGTTTGCTATATGGTTGAGTAAAGCATACAGCTCCCCAAAAGAAGACCCGGATCTTGGGGCAGAAGAGAAGAAGCTCATACTTGGAGGCAACGTATCAAAAGAACCTGTGTCAGTTATTCCTTGGAAATTAATTTTATCAAAAGCACCTGTTTGGGCTTTAATAATCTCTCACTTCTGCCACAATTGGGGGACATTTATTCTATTAACCTGGATGCCTACATACTATAATCAGGTTCTGAAGTTCAATCTCACTGAATCTGGGCTATTTTGTGTCCTGCCGTGGTTAACCATGGCTGTTTTTGCAAATATAGGAGGCTGGATTGCAGATACACTTATTAGCAAAGGCCTTTCCATAACATCTGTCCGAAAGATTATGCAATCAATCGGGTTTCTGGGTCCTGCATTTTTTCTTACACAACTAAGCCATGTGAGAACACCCGCCATGGCAGTACTTTGCATGGCTTGCAGTCAGGGATCTGATGCATTCTCACAATCTGGTCTATATTCCAATCACCAAGACATTGGACCACGCTATGCTGGAGTATTGCTGGGACTATCAAATACTGCAGGAGTGCTTGCTGGTGTCTTTGGTACAGCTGCAACTGGATACATACTCCAACGAGGTTCTTGGGATGATGTATTTAAGGTTGCTGTTGCATTGTACTTAATAGGCACATTGGTCTGGAATCTCTTTTCAACTGGAGAGAAAGTTCTTGACTGA 1758 0.4283 MTMSGLISNRNFGSFLAPGNGYRSGKDISISGVAVAKDPFSRWQHKMYLPLEEKMRTSQNRVEPCSLVSHQSSQCLNFKLRASGRSCCSFLSSAPYGSNNVEQREVYRLGLSKRKHAQTEAGKASKFRVNYKSEEYDIAETKMKPLQSAEGTGEAILLEGNLQQVSPWWQQFPKRWVVVLLCFAAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQIIGGIWADKLGGKVVLGFGVVWWSIATVLTPIAARLGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPLLIQKFGWPSVFYSFGSLGSIWFAIWLSKAYSSPKEDPDLGAEEKKLILGGNVSKEPVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANIGGWIADTLISKGLSITSVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFSTGEKVLD 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02278 585 PANTHER ASCORBATE TRANSPORTER, CHLOROPLASTIC 57 585 - -
Cca01g02278 585 Gene3D MFS general substrate transporter like domains 383 583 IPR036259 -
Cca01g02278 585 PANTHER SOLUTE CARRIER FAMILY 17 57 585 - -
Cca01g02278 585 CDD MFS_SLC17A9_like 179 578 IPR044777 -
Cca01g02278 585 Pfam Major Facilitator Superfamily 182 543 IPR011701 GO:0022857|GO:0055085
Cca01g02278 585 ProSiteProfiles Major facilitator superfamily (MFS) profile. 178 582 IPR020846 GO:0022857
Cca01g02278 585 SUPERFAMILY MFS general substrate transporter 164 577 IPR036259 -
Cca01g02278 585 Gene3D MFS general substrate transporter like domains 173 362 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02278 Cca-Chr1 51142031 51149024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02278 1 585 Organic Solute Cotransporters AT4G00370 74.403 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02278 K08193 - gmx:100793618 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02278 01 51142031 51149024 Cca01g02278 01 51142031 51149024 ECH
Cca07g01918 07 46325895 46332922 Cca01g02278 01 51142031 51149024 PCT