Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01983 ATGACTCAAGAGTATACTATTGGAGGTAGCTTGCAAGAGGGTCTACAAGATGCAGCTTCAGTTGGACCTTCAAATGGTTTCAAGATTAATGCAAATAGTGCTCTTCAAATTTCATCATCGCAAAGGGGACTTCTAAGCGATAAAAGTCATCATAGAGGAAAACACAGAATGTTGACATCTATTGCTAATATCTATAAATTCTCACATTTTGTGCCTTCATCTGTCAAGGAAAATTTCAGAAAACCTTTTAATTGTGTTTTTTCCCAGATTGATTGGCAATCTCTCAGGAGAAGCTGCAAGCAATGGATTAAGAATCCTTTGAACATGGCCCTTCTTTTATGGATAATTTGTGTAGCTGTTTCAGGAGCTATTCTTTTTCTTGTCATGACAGGAATGTTGAACAAAGTCCTCACAAAGCAGTCACAGAGGAACTCATGGTGTGAGGTCAACAACCAATTTCTCAATGCTCTATTTACTCTCATGTGTCTATACCAACATCCAAAGCGGTTCCACCATCTTGTACTTCTCTGTAGGTGGAAGCCAAAGGACATTATAATCCTAAGAAAAATATATTGTAAGAATGGCACTTGCAAGCCTCATGAATGGATCCATATGATGGTGGTAGTTGTGTTACTCCATGTTATTTGCTTTGCTCAGTATGCCCTTTGTGGCCTTAACTGGGGTTTCAATAGATTTGAAAGACCTGTTGTTGGGGTTGGTATATGCATCTCCATTGCAATTGCTGCTTCAGCAATTGCAGGAGTATACTGCATTGCCAGCCCTCTAGGCAAGGAGTATGAAATTGATGAAGAAGCACAGAATCATATTCCCACTAATAACACATTTGCGACAAGAAATGATCATAGTCTTGTTGAGTACACACCTCAATGGAGAGGGGGACTATTTGATTTTTTGGACAATCTTTCTGTGGCATGTCTTGCTCTCTTTTGTAGCTTTTGTGTCTTTGGAAGGAATATGGAAAGACTTCATTTTGGTAACATGTATGTCCACATTGCAACTTTCCTCCTCTTCTGTGTGGCTCCCTTTTGGATCTACAATGTGGCTACCTTGAATATTGATGATGAGTCTGTGAGAAGAGCTTTTGGGTTGATGGGTATATTGCTTTGTGTGTTTGGTTTACTCTATGGTGGCTATTGGAGGATTCAAATGAGGGAGAGATTTAACTTGCCACCAAATAAAATTTGTTGTGGGAACCCAGCAATGACAGATTGCATACAGTGGCTATTTTGTTGCTGGTGTTCCCTTGCACAGGAAGTAAGAACTGCAGAATTCTATGACATAGTTGATGAGAAATTTTTCAGCAAAAGACAGACTGAAAGTTGTGTTCAGCCTGCACTGAACTCATTGCCTGCTGAAGATAAAGCTCCTCATGTTACATCAATGTCCACTTCATTTTGGAGCAGTCATGGTTTGTCTAAGATCTGGTCTGAAGAGTCAAAAGATTATTCGAGAGAAAAAAAGCAAAATGTTATGGAAGCGCCTATTCCTCTATCAATTCAAATAGATGACAATGACAGCAAAAGAACATAG 1551 0.3926 MTQEYTIGGSLQEGLQDAASVGPSNGFKINANSALQISSSQRGLLSDKSHHRGKHRMLTSIANIYKFSHFVPSSVKENFRKPFNCVFSQIDWQSLRRSCKQWIKNPLNMALLLWIICVAVSGAILFLVMTGMLNKVLTKQSQRNSWCEVNNQFLNALFTLMCLYQHPKRFHHLVLLCRWKPKDIIILRKIYCKNGTCKPHEWIHMMVVVVLLHVICFAQYALCGLNWGFNRFERPVVGVGICISIAIAASAIAGVYCIASPLGKEYEIDEEAQNHIPTNNTFATRNDHSLVEYTPQWRGGLFDFLDNLSVACLALFCSFCVFGRNMERLHFGNMYVHIATFLLFCVAPFWIYNVATLNIDDESVRRAFGLMGILLCVFGLLYGGYWRIQMRERFNLPPNKICCGNPAMTDCIQWLFCCWCSLAQEVRTAEFYDIVDEKFFSKRQTESCVQPALNSLPAEDKAPHVTSMSTSFWSSHGLSKIWSEESKDYSREKKQNVMEAPIPLSIQIDDNDSKRT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01983 516 Pfam Protein of unknown function (DUF2985) 101 179 IPR021369 -
Cca01g01983 516 PANTHER - 8 496 - -
Cca01g01983 516 Pfam PLAC8 family 297 427 IPR006461 -
Cca01g01983 516 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 296 430 IPR006461 -
Cca01g01983 516 PANTHER PLAC8 FAMILY PROTEIN-RELATED 8 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01983 Cca-Chr1 46262606 46265408 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01983 - - gmx:100799892 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01649 05 35883948 35886728 Cca01g01983 01 46262606 46265408 ECH
Cca01g01983 01 46262606 46265408 Cca01g01983 01 46262606 46265408 ECH