Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01888 ATGGTAGGACCAGTGAGACCTCAATTTGTGTTGTTTGGTTCGTCCATAGTTGAATTCAGTTATAGTAATGAAGGTTGGGGAGCTATTCTTGCCAATTTCTATGCTCGCAAGGCAGATATAATTTTGCGAGGATATGCTGGTTGGAATTCAAGGTGTGCTCTGCAGGTTCTGGATATAATATTTCCCAAGGATGCCACTATTCAACCATCACTGGTGATTGTGTACTTTGGTGGTAATGATTCTACTCATCCACATCCATCAAGCCATGGTCTTCATGTACCCCTCCAAGAATACATTGAAAATATGAGGAAAATTGCTACCCATCTTATGAGCCTTTCAAAGAAGACTCGCATAATATTTCTTACTTGCCCTCCCATCAATGAGACACAAATGCATGAAACGCTCAGTCATCTGGGGCAAATAAGAAGGACTAATGAATCGTGTCGAGTATACTCGGAAGCGTGTTTGGAGTTGTGCCGCGAGATGAATGTGAAGGCCATTGATATGTGGTCTGCACTGCAGCAAAGACATGACTGGTTGGATGTTTGCTTCACGGATGGAATTCATTTATCATCTGAGGGGAGCAAGATAGTGGCTAAAGAGATATTGAAGGTCCTCAGAGAAGCAGACTGGGAACCTAGTCTGCACTGGAACTCAATGCCAAATGAGTTTGCTTAA 678 0.4277 MVGPVRPQFVLFGSSIVEFSYSNEGWGAILANFYARKADIILRGYAGWNSRCALQVLDIIFPKDATIQPSLVIVYFGGNDSTHPHPSSHGLHVPLQEYIENMRKIATHLMSLSKKTRIIFLTCPPINETQMHETLSHLGQIRRTNESCRVYSEACLELCREMNVKAIDMWSALQQRHDWLDVCFTDGIHLSSEGSKIVAKEILKVLREADWEPSLHWNSMPNEFA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01888 225 CDD Isoamyl_acetate_hydrolase_like 8 206 - -
Cca01g01888 225 PANTHER ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 1 224 IPR045136 -
Cca01g01888 225 SUPERFAMILY SGNH hydrolase 7 209 - -
Cca01g01888 225 Gene3D SGNH hydrolase 6 225 IPR036514 -
Cca01g01888 225 Pfam GDSL-like Lipase/Acylhydrolase family 11 196 IPR013830 -
Cca01g01888 225 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01888 Cca-Chr1 44176931 44182133 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01888 K23978 - gmx:100796512 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01888 01 44176931 44182133 Cca01g01888 01 44176931 44182133 ECH
Cca07g01598 07 40898358 40901819 Cca01g01888 01 44176931 44182133 PCT