Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01803 ATGGTGGCAGATTCTAAGTCCAAATCCGACCTCTCCTTCTCCAAAACCTTTGCCAGCAGTTCTTTCTCTTCATTTTTCGCTGAGGTATGTACTATTCCTTTGGACACTGCCAAAGTTAGGCTTCAACTTCAAAAACAAGCTGTAGCTGGTGATGTAGTCTCCTTACCTAAATATAAGGGTATGCTGGGAACAGTGGCAACCATTGCTAGAGAAGAAGGTCTTTCAGCTCTCTGGAAGGGCATTGTGCCAGGGTTACATCGTCAATGTTTGTATGGAGGTTTAAGAATTGGGTTATATGAGCCAGTTAAGACTTTCTATGTGGGAAAGGACCATGTTGGAGATGTTCCATTGTCGAAGAAAATTCTTGCTGCATTTACAACTGGTGCTGTGGCAATTGCAGTGGCAAATCCAACTGATCTGGTCAAAGTTAGACTTCAGGCAGAAGGGAAATTACCACCTGGTGTTCCCAGACGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTCGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAATGCTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAGCAGACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTTACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCTGTCTGTATTGGCTCCCCAGTTGATGTGGTTAAATCGAGAATGATGGGAGATTCTAGTTACAAGAGCACTCTTGATTGTTTTATCAAAACATTAAAGAATGATGGACCCTTTGCTTTTTATAAAGGGTTCCTCCCAAACTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGA 918 0.4248 MVADSKSKSDLSFSKTFASSSFSSFFAEVCTIPLDTAKVRLQLQKQAVAGDVVSLPKYKGMLGTVATIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKTFYVGKDHVGDVPLSKKILAAFTTGAVAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVRALWTGLGPNIARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSSYKSTLDCFIKTLKNDGPFAFYKGFLPNFGRLGSWNVIMFLTLEQTKKFVKSLESS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01803 305 Gene3D Mitochondrial carrier domain 13 304 IPR023395 -
Cca01g01803 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
Cca01g01803 305 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
Cca01g01803 305 Pfam Mitochondrial carrier protein 114 209 IPR018108 -
Cca01g01803 305 Pfam Mitochondrial carrier protein 10 108 IPR018108 -
Cca01g01803 305 Pfam Mitochondrial carrier protein 216 300 IPR018108 -
Cca01g01803 305 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Cca01g01803 305 PRINTS Mitochondrial brown fat uncoupling protein signature 99 111 IPR002030 GO:0006839|GO:0031966
Cca01g01803 305 PRINTS Mitochondrial brown fat uncoupling protein signature 169 186 IPR002030 GO:0006839|GO:0031966
Cca01g01803 305 PRINTS Mitochondrial brown fat uncoupling protein signature 212 230 IPR002030 GO:0006839|GO:0031966
Cca01g01803 305 PRINTS Mitochondrial brown fat uncoupling protein signature 287 305 IPR002030 GO:0006839|GO:0031966
Cca01g01803 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 206 IPR018108 -
Cca01g01803 305 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 4 299 - -
Cca01g01803 305 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 1 4 299 - -
Cca01g01803 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01803 Cca-Chr1 42141435 42145213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01803 8 305 Miscellaneous Gene Families AT3G54110 82.943 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01803 K15103 - gmx:100809667 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01518 07 39337661 39342649 Cca01g01803 01 42141435 42145213 PCT