Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01578 ATGGAGTGGTTGGAAAACCTACGTGCCTCCTTAACACACTTTCCAGGTCATGTGGTGGCAAAAGATGGTGTTGGTCCAATGGTGCAAAAAGGGTTTTTGAGCCTTTACACGTCCAAAACCACAAAACATGCAAGTTTGCAAGAAATGGTAAGAGAAGAGATCGGAAGAGTGATCCAAACATACACCAATGAGCCTCTTAGCCTAACCCTAACAGGTCATAGCCTTGGAGTTGCACTTGCAATCCTGAGCGCGTATGATATAACTGCCACTTTCGAGAATGCACCAATGGTGACCGTTGTGTCTTTTGGTGGGCCTCGTGTAGGAAATGAGAGCTTTAGGAAGCAATTGGAACAGAGTGGGATTAAGATACTGAGAATAGTAAACTCTGATGATGTTGTGACTAAGGTTCCGGGGCTTGTGGTGAATTTGGATGATGTGGCGAGCAATGAAGATGTCCACGTGGGAATCTGGTCACGGTGGTTGAACAAGCATGTAGAGAACACACAATTGGTCTATGGCGACATTGGACAAGAGTTAAGGCTAAGTAGCAAGGAGTTACCATATCTCAATAAAGGAGATGTTGATGTGTCATGA 594 0.4478 MEWLENLRASLTHFPGHVVAKDGVGPMVQKGFLSLYTSKTTKHASLQEMVREEIGRVIQTYTNEPLSLTLTGHSLGVALAILSAYDITATFENAPMVTVVSFGGPRVGNESFRKQLEQSGIKILRIVNSDDVVTKVPGLVVNLDDVASNEDVHVGIWSRWLNKHVENTQLVYGDIGQELRLSSKELPYLNKGDVDVS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01578 197 PANTHER TRIGLYCERIDE LIPASE-RELATED 1 196 - -
Cca01g01578 197 Pfam Lipase (class 3) 2 139 IPR002921 GO:0006629
Cca01g01578 197 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 1 196 - -
Cca01g01578 197 SUPERFAMILY alpha/beta-Hydrolases 3 158 IPR029058 -
Cca01g01578 197 CDD Lipase_3 2 145 - -
Cca01g01578 197 Gene3D alpha/beta hydrolase 1 196 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01578 Cca-Chr1 35302684 35303277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01578 1 194 Acyl Lipid Metabolism Gene Families AT2G44810 56.566 4.43e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01578 K16818 - gmx:106798329 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01578 01 35302684 35303277 Cca07g02081 07 48527747 48528922 PCT