Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01482 ATGGCGAAAACCACTCACATTGTCGTAATTGCAGGCCCTGGCTTCACCCACTTAGTCCCCATTCTCCAATTCTCCAAAAGACTCGTCAACCTCCACCCAAACTTTCACGTCACATGCATCATTCCCTCGTTAGGGTCTCCCCCAAGTGCCTCAAAAACCATCCTCGAGACCCTCCCTTCAAACATCACTTCAACTTTCCTTCCCCCAGTGAGTCCCAAAGACCTTCCCCAAGGGGTTGCAAACGAAGTCCAAATGCAACTCACGGTCACACACTCTCTCCCCTCCATCCACCAAACGTTGAAGTCCTTAACCTCAGACTCAGACACCGCCCTCGTGGCCATGGTGGTTGATTCCTTCGCCTTCGAAGCCCTAGACTTCGCTCAAGAGTTCAACCTCTTATCCTACGTGTACTTCCCCGCAGCAGCCACCACACTCTCTGTGCTCATGCACTTGCCCAAGCTCGACGAGGAAACATCGTGTGAGTACAGAGATTTGCCCTATCCGGTTAAAGTGCCAGGGTGTGTGCCACTCCACGGGAAGGATCTCTACACCCCAACTCAAGATCGAACCAACCTCGTTTACAAACTCTTGCTCCAGCGCGTCAAACGCTACCGTTTCGTCGATGGGATTTTCATTAACAGCTTCTTGGAGATGGAAGAGGGTCCCATAGCAGCGTTGAAGGATGAGATAAGAGGGTACCCTAGAATGTACCCCGTTGGACCCATTGTCCAAACGGGAACGGGTAAGTCCGAGAAAGGGTTGGAGTGTTTGACGTGGTTGGACAAACAAGAGAAAGGTTCGGTGTTGTATGTTTCATTCGGGAGCGGTGGAACGTTGTCGCAGGAGCAAATGAACGAGTTGGCTCATGGCTTAGAGATGAGCAAGCACAAGTTCTTGTGGGCAGTGAGGGCACCGAATGACGTTGCAAACGCTGCTTATCTCGGTGGTGGAGAAAAGTGCGTTGACCCTTTGGAGTTTTTGCCGTTTGGGTTCATGGAGAGGACCAAGGAGCAAGGAATGGTGGTGCCATCGTGGGCACCGCAGGTTCAGATTCTTGGCCATGGTTCGGTTGGTGGGTTTTTGACTCACTGTGGGTGGAACTCGACTCTGGAGAGTGTGCTTCAGGGCGTGCCACTCATCACGTGGCCACTGTTCGCGGAGCAGAAGATGAACGCGGTTGTGCtgagtgagagcctcagggtgggggtgaggccgagggcgaATGAGAAGGGGTTGGTGGAGAGGGATGAGATCAGTGATGTGGTGAAGAGGTTGATGGAAGGAGTGGAAGGTGTTAAGTTTCGCAATAGGATGAAGGAGTTGAAAGAAGCTGCTACTAACACACTCAAGGAAGATGGGGCTTCCACCAAGACTCTTTCTCAGTTGGCACTCAAGTGGAAGAGTTTGGCTTAG 1413 0.5032 MAKTTHIVVIAGPGFTHLVPILQFSKRLVNLHPNFHVTCIIPSLGSPPSASKTILETLPSNITSTFLPPVSPKDLPQGVANEVQMQLTVTHSLPSIHQTLKSLTSDSDTALVAMVVDSFAFEALDFAQEFNLLSYVYFPAAATTLSVLMHLPKLDEETSCEYRDLPYPVKVPGCVPLHGKDLYTPTQDRTNLVYKLLLQRVKRYRFVDGIFINSFLEMEEGPIAALKDEIRGYPRMYPVGPIVQTGTGKSEKGLECLTWLDKQEKGSVLYVSFGSGGTLSQEQMNELAHGLEMSKHKFLWAVRAPNDVANAAYLGGGEKCVDPLEFLPFGFMERTKEQGMVVPSWAPQVQILGHGSVGGFLTHCGWNSTLESVLQGVPLITWPLFAEQKMNAVVLSESLRVGVRPRANEKGLVERDEISDVVKRLMEGVEGVKFRNRMKELKEAATNTLKEDGASTKTLSQLALKWKSLA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01482 470 Gene3D Glycogen Phosphorylase B; 250 450 - -
Cca01g01482 470 PANTHER GLYCOSYLTRANSFERASE 1 469 - -
Cca01g01482 470 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 247 396 IPR002213 GO:0008194
Cca01g01482 470 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 461 - -
Cca01g01482 470 CDD GT1_Gtf-like 6 466 IPR002213 GO:0008194
Cca01g01482 470 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 1 469 - -
Cca01g01482 470 Gene3D Glycogen Phosphorylase B; 6 455 - -
Cca01g01482 470 ProSitePatterns UDP-glycosyltransferases signature. 345 388 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01482 Cca-Chr1 31476977 31478829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01482 2 468 Glycosyltransferase AT1G01420 47.761 5.77e-159 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01482 K08237 - gmx:100800142 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01482 01 31476977 31478829 Cca07g01127 07 27569801 27571426 PCT