Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01480 ATGGATACCACAACGCACATTGCAGTTATTCCTGCTGTAGGGTTCAGCCCTTTAGTTCCGGGTCTTCAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGCCATTTAGTTCCGGTTCTTCAGTTCTCCAAGCGACTCGTTGAGCTGCATCCACATTTTCATGTCACATGCATCGTTCCCTCACTCGGGTCTATCCCAAGTGCCTCAAAAGCCATCCTCAAAACCCTTCCACCAAACATCAACCACGTTTTTGTTCCACCGGTGAACCTCAAAGACCTACCACAAGAGACTCCCGTAATTCTCCAAATTCATCTAACCATGACTCGCTCCATGCCATCTATACACAAGGCCTTGAAATCCTTAACTTTAGAGACCACCCTTGTGGCCATGGTGGTTGATCTTTTGGCCTTTGAAGCACTAGATTTTGCTCAAGAGTACAACATGTTGTCCTACGTTTACTTCCCTTCCTCAGCTACCACACTCTCCACGCACTTGTATTTGCCCAAGTTGGACGAGGAAACATCATGCGAGTATAGGAATCTCATAGATCCTATTGAAGTACCTGGTTGTGTACCATTCCATGGTCGTGATCTCTATACCGTAGCTCAAGATCGGACTGACCCAGTTTACAAAATCTTGCTCCAACGTGTTAAACGAATCCGTTATGTTGATGGGATCTTTGTTAATAGCTTCTTGGAAATGGAAAATGGTCCCATCGAAGCATTGAAAGACGAGGAAAGGGGGTACCCTTGTGTGTATCCCGTTGGACCAATTGTTCAAAGTGGTGATGATGCAAAAGGGTTGGATTTGGAGTGTCTAAAATGGTTGGACAAACAGCAAGTTGGTTCGGTTTTGTATGTTTCTTTTGGTAGTGGTGGAACATTGTCAAAGGAACAAATGAATGAGTTGGCTTGTGGTTTGGAGTTGAGTAATCATAAGTTCTTATGGGTTGTGAGAGCACCAAATGATACAGTCGATGTTGCTTATCTTGGTGCACAAAATGATGTGGATCCGTTGCAATTTTTACCATGTGGGTTTTTGAATAGAACCAAAGAGCAAGGTTTGGTTATTCCTTTATGGGCACCTCAGGTTCAAGTCCTTGGTCACAGATCAGTTGGTGGGTTCTTGACTCACTGTGGTTGGAATTCGACCCTTGAGAGTGTGCTGAATGGTGTGCCACTCATCACATGGCCACTGTTTGCGGAGCAGAGAATGAATGCGATTGTGCTGAGTGAGAGTCTCAAAGTGGGAGTCAGACCAAAAGTTAATGAAAAGGGGTTGGTGGAAAGGGAAGAAATTGTTGAAGTGATCAAGTGTTTAATGGAAGGGGAACAAGGTAGGGAAATGAGAAAAAGAATGAAGGAATTGAAAGAAGCTGCTATTAATGCTATCAAGGAAGATGGATCTTCAACAAAGAATCTTTCTCAGGTAGCACTTAAGTGGAAAAGTTTGGTATAG 1563 0.4012 MDTTTHIAVIPAVGFSPLVPGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSHLVPVLQFSKRLVELHPHFHVTCIVPSLGSIPSASKAILKTLPPNINHVFVPPVNLKDLPQETPVILQIHLTMTRSMPSIHKALKSLTLETTLVAMVVDLLAFEALDFAQEYNMLSYVYFPSSATTLSTHLYLPKLDEETSCEYRNLIDPIEVPGCVPFHGRDLYTVAQDRTDPVYKILLQRVKRIRYVDGIFVNSFLEMENGPIEALKDEERGYPCVYPVGPIVQSGDDAKGLDLECLKWLDKQQVGSVLYVSFGSGGTLSKEQMNELACGLELSNHKFLWVVRAPNDTVDVAYLGAQNDVDPLQFLPCGFLNRTKEQGLVIPLWAPQVQVLGHRSVGGFLTHCGWNSTLESVLNGVPLITWPLFAEQRMNAIVLSESLKVGVRPKVNEKGLVEREEIVEVIKCLMEGEQGREMRKRMKELKEAAINAIKEDGSSTKNLSQVALKWKSLV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01480 520 Coils Coil 22 23 - -
Cca01g01480 520 CDD GT1_Gtf-like 68 495 IPR002213 GO:0008194
Cca01g01480 520 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 317 477 IPR002213 GO:0008194
Cca01g01480 520 Gene3D Glycogen Phosphorylase B; 68 505 - -
Cca01g01480 520 Gene3D Glycogen Phosphorylase B; 299 500 - -
Cca01g01480 520 PANTHER GLYCOSYLTRANSFERASE 66 519 - -
Cca01g01480 520 ProSitePatterns UDP-glycosyltransferases signature. 395 438 IPR035595 -
Cca01g01480 520 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 67 510 - -
Cca01g01480 520 Coils Coil 481 501 - -
Cca01g01480 520 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 66 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01480 Cca-Chr1 31378584 31380405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01480 70 518 Glycosyltransferase AT1G01420 48.230 4.10e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01480 K08237 - gmx:100779176 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01480 01 31378584 31380405 Cca07g01122 07 27334804 27336389 PCT