Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01479 ATGAATAGCAGTGTGGATGGCCACAAATCTCCAATGGAGAAAACGGTTCACATAGCAATTGTTACTAGTCCTGGCTTCAGCCACTTGGTCCCAATTGTTCAATTCTCAAAGAGACTTGTTCATCTCCATCCACACTTTCATGTCACATGCTTAATTCCCTCACTTGGGTCCACCCCAAGTGCCTCAAAATCCTTTCTTCAAACTCTTCCACCAAACATCAACTCCATCTTTCTTCAACCCGTGAACCCTGAGGATCTACCACAAGGGGATGCCATAGAAACCCAAATTCAGTTCACAGTGACACTCTCTCTTGCATCTATACACGAGGCCTTGAAAAACTTAACTTCAAGCACTCCCTTTGTGGCCTTGGTGGTTGATTCTTTCGCCTTTGAAGCATTAGATTTTGCTCAAGAATTCAACTTGTTGTCCTATATTTACTTCCCTGCATCAGCAACAACACTTTCTTGGTACTTCTATGTGCCCACGTTGGACAAGGAAACATCATGTGAGTACAGAGATTTTCATGAGCCTATTGAGATACCGGGTTGTGTTCCAATTCAAGGCAGGGATCTCAATAACCAATCTCAAGATCGATCAAGTCAAGTTTACAAACTCTTTCTAGACCGGGTTCAGCGGTTCCTTTTGGTTGATGGGATCTTTGTTAATAGCTTCTTGGAAATGGAAAAGGGTCCCATAGAAGCATTGAAAGATGAAGAAAGGGGGTACCCTTGTGTGTATCCTGTTGGACCAATTGTTCAAAGTGGTGATGATGCAAAAGGGTTGGACTTGGAGTGTCTAAAATGGTTGGACAAACAGCAAGTTGGTTCGGTGTTGTATGTTTCTTTTGGGAGTGGTGGAACATTGTCACAAGAACAAGTGAATGAGTTGGCTTATGGTTTGGAGTTGAGTAATCATAAGTTCTTATGGGTTGTGAGAGCACCAAGTGGTTTGGCCAGTGATGCTTATCTTAGTGCAAAAAATAATGTTGATCCGTTGGAATTTTTACCATGTGGGTTTTTGGAGAGAACCAAAGAGCAAGGTGTGGTTATTCCTTCATGGGCACCTCAGGTTCAAGTTCTTAGCCATAGTTCAGTTGGTGGGTTTTTGACTCACTGTGGTTGGAATTCAATTCTTGAAAGTGTGTTGAATGGTGTTCCACTCATCACATGGCCACTGTTTGCGGAGCAGAGAATGAATGCGGTTGTGCTGAGTGAGGGTCTCAAAGTGGGAGTGAGGCCAAAACTTAATGAAAATGGGTTGGTGGAAAGGGAAGAAATTGTTGAGGTGATTAAGTCTCTAATGAAAGGGGAAAAAGGTGTGGAATTGAGAAAAAGAATAAAAGAATTGAAAGAAGATGCTATTAATGCAATCAGGGAAGGTGGATCTTCTACGAAAACCCTTTCTCAGTTGGTATTAAAGTGGAAAAGTTTGGTATAA 1437 0.4203 MNSSVDGHKSPMEKTVHIAIVTSPGFSHLVPIVQFSKRLVHLHPHFHVTCLIPSLGSTPSASKSFLQTLPPNINSIFLQPVNPEDLPQGDAIETQIQFTVTLSLASIHEALKNLTSSTPFVALVVDSFAFEALDFAQEFNLLSYIYFPASATTLSWYFYVPTLDKETSCEYRDFHEPIEIPGCVPIQGRDLNNQSQDRSSQVYKLFLDRVQRFLLVDGIFVNSFLEMEKGPIEALKDEERGYPCVYPVGPIVQSGDDAKGLDLECLKWLDKQQVGSVLYVSFGSGGTLSQEQVNELAYGLELSNHKFLWVVRAPSGLASDAYLSAKNNVDPLEFLPCGFLERTKEQGVVIPSWAPQVQVLSHSSVGGFLTHCGWNSILESVLNGVPLITWPLFAEQRMNAVVLSEGLKVGVRPKLNENGLVEREEIVEVIKSLMKGEKGVELRKRIKELKEDAINAIREGGSSTKTLSQLVLKWKSLV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01479 478 Coils Coil 439 459 - -
Cca01g01479 478 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 17 471 - -
Cca01g01479 478 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 275 405 IPR002213 GO:0008194
Cca01g01479 478 ProSitePatterns UDP-glycosyltransferases signature. 353 396 IPR035595 -
Cca01g01479 478 Gene3D Glycogen Phosphorylase B; 262 458 - -
Cca01g01479 478 PANTHER GLYCOSYLTRANSFERASE 12 477 - -
Cca01g01479 478 Gene3D Glycogen Phosphorylase B; 17 464 - -
Cca01g01479 478 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 12 477 - -
Cca01g01479 478 CDD GT1_Gtf-like 17 474 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01479 Cca-Chr1 31359404 31361049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01479 1 476 Glycosyltransferase AT1G01420 47.390 4.38e-158 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01479 K08237 - gmx:100778639 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01479 01 31359404 31361049 Cca07g01120 07 27282892 27284759 PCT