Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00516 ATGGGTGCATGTTTCAGTAAGAAGAAAGAGTCTTCTCCTTCTAACCCTTCCCCTCTTGCTGCAACCAAGTCATCTTCTTCCACAGCACCTGCTGTGCCTGAGCTGAAGAGTCCTTCTCTTAGTGGTGTCACTGTTTCCAAACTCAAGGTGGAAACTGACCCAGAAGTGAAACTGAACAAGGAGAACACTAAGAAAGTGGAAGAGAAGCATGAGACAGTGCCAGAAGGTGAAGGGCATGTGAAAAAAGAGATTTTTATCATCAAGCACAGGAAGAGCCATGATGACAGAGAGAGAAACTCCAACACAGCTCAGCAGAACGCCACCACTGAATCAATGTGTGACAAAACTgcaccagcagcaccaccaccagcagtagtagcagTGAGGACTTCAAGCTGCACGAAAGAAGAGGTGGATGCTATTCTCATACAGTGTGGGAGACTCAGCAGAAGCTCTTCAGGCAATGCTGTTGCTGCCTCTGGAGAACACAGGAGAAGGTACTCAGGCTCAAAGAGAAGCTACGATTTTGACCACTGTGACAATGACACCATCTCCAATGAAGAGGACACAAGGAAAGCCAATGCAAGTGAAAACAGCAGTGAATTGTGTGAGGATGACAGACATCAATACCGGCCGCGGCACCGCCAGTCGCCGAAGCAGCAACAAAGATCAAGCAGTAGAGAGAGGAGAGTCAGTAGATCTCCTGGAAGAAGATCATCAGATAACACCACACCTGCTGCCAATGCAAGAAGCAATAATAGCAACGCTGTTTCTAGGCCTGGAAAAATGGTTTCTGTGCCTGCCACTGTCTCTTCACTAGTGATGGATAAGAGTAACAACAATGGTGGTGGTGAATCTGCAGCAGCCACTGGCATCAAGAGGATCACAGTGAAGAGAAATGTTGGTGCTGCCTCGCCACGATCTCAGTCTCCTGCAAGAGCAATTGGGAATGCAGCAAATGCTGGTAAAGCATTCAATGAGAGTCAGCAGCAGCAGCCATCACTTAGCCGCAGCTCTTCAAGGAAAGCAGAACAATCACCTTACAAAAGAAATCCACTCAGTGAGATTGAGCCTAATTCCCTTGCTTTTCCACATTCAACACCCAACAACAACAACAGCAGGGTGCAAAACAAACCCAGAAAAGAATTTGAAATTGAAGCTACTCAGAAACCAAATGGCGGCAGAACTGTATTGGACAAGGGCATGATTGCAAATTGCAAGACAAAGGTGCAACAAGAGGAAGATGTGAAAATGCAGCCTTCAATTACTGATAATATTGTTGTGAAAACAATGGTGCCACCGGGGGTTGACAACCTAAAACCTCACACATTAACAAGAAGCAGATCTGCAAGGCGATCCCGGGATTTAGACCTAAACCCTGAAGCTCTATTGAATCCTCCACAGTCCTACACTTCACTGCTGCTTGAAGATATCCAGAATTTTCATCAAAAGAGCACACCTTCTGTTCCTCTCCCAGCTTGTGTTACCAAAGCTTGCTCTATCCTTGAAGCTGTTGCTGATCTCAACTCTAACACCAACTTGAATTTCTGTGGTGCAGAAGACAGGAGAAGTCCACCATCTTTTCAGTGTAGTAGGAATGATTACAATGTTCCGTTGAGTGCCAATGATTATGGGAAAGGGGAGCCTGATGCTGAGGACCCTGTTGTAGAATCTATGTTAGTTGTCAATGATGATGATGTGATGGAACCAAGCTTGCATAAGTATGTGACATTGAATAGGGGTGGTTCATTTGGTGGGGTGGACATGGACGATCAAGAGTCTTCAGGAAGCAACAGCTTCACGGTGAGTAGTGGTCAACAGCACTGGGGGATTTCTTCTTCATCATGGGAACCAAGTTCTGTTGAATCAAAAGATAGTTGGACTTCAAGATTGAACTGCTCCAGAGAGGAAAGTCTGAAAAGTCCTTTAGGCTTGGAAGGGAGGGTATCATCTGAAGCAGGGTGTGATGTGGATGGAGTTGGGAAGAGATTGAATAGCAAAAGGAGACAGTGTGATCATCAGCACGGCAGTGGGATAGGGCGTGGCAGGCTTGGTGCCAATAAAGTTCTTCACAACATACCTGTTGTCACAGCATCTACACCCACATAG 2109 0.4519 MGACFSKKKESSPSNPSPLAATKSSSSTAPAVPELKSPSLSGVTVSKLKVETDPEVKLNKENTKKVEEKHETVPEGEGHVKKEIFIIKHRKSHDDRERNSNTAQQNATTESMCDKTAPAAPPPAVVAVRTSSCTKEEVDAILIQCGRLSRSSSGNAVAASGEHRRRYSGSKRSYDFDHCDNDTISNEEDTRKANASENSSELCEDDRHQYRPRHRQSPKQQQRSSSRERRVSRSPGRRSSDNTTPAANARSNNSNAVSRPGKMVSVPATVSSLVMDKSNNNGGGESAAATGIKRITVKRNVGAASPRSQSPARAIGNAANAGKAFNESQQQQPSLSRSSSRKAEQSPYKRNPLSEIEPNSLAFPHSTPNNNNSRVQNKPRKEFEIEATQKPNGGRTVLDKGMIANCKTKVQQEEDVKMQPSITDNIVVKTMVPPGVDNLKPHTLTRSRSARRSRDLDLNPEALLNPPQSYTSLLLEDIQNFHQKSTPSVPLPACVTKACSILEAVADLNSNTNLNFCGAEDRRSPPSFQCSRNDYNVPLSANDYGKGEPDAEDPVVESMLVVNDDDVMEPSLHKYVTLNRGGSFGGVDMDDQESSGSNSFTVSSGQQHWGISSSSWEPSSVESKDSWTSRLNCSREESLKSPLGLEGRVSSEAGCDVDGVGKRLNSKRRQCDHQHGSGIGRGRLGANKVLHNIPVVTASTPT 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00516 702 MobiDBLite consensus disorder prediction 271 286 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 164 212 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 8 46 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 433 454 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 586 633 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 237 260 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 50 100 - -
Cca01g00516 702 PANTHER OS02G0734667 PROTEIN 1 699 IPR040412 -
Cca01g00516 702 MobiDBLite consensus disorder prediction 322 347 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 221 236 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 1 122 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 144 378 - -
Cca01g00516 702 PANTHER OS02G0734667 PROTEIN 1 699 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 360 376 - -
Cca01g00516 702 MobiDBLite consensus disorder prediction 590 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00516 Cca-Chr1 6391910 6394561 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00516 - - gmx:102667523 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00516 01 6391910 6394561 Cca05g01382 05 32089919 32092737 PCT