Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00265 ATGGCAATTTCTCCCGtcatcttcaccttcttggtcttgctcatctgcgtcacaatcctcatcttcaCCAACAACGCCACCTACACCATCGATCCAATTGGCTTCTATCCCGATGTCCAACCATTGGCTCATTTCTCTTCCCCCACTCCCCAACGCCAAAGATTGCCCCTCAAGGGAGACCCTTTCTTGGATGATGCAAACATCGCTTGGAACCTTTGTAAGGCTCCCTTTGCAGCGGATTATATACCCTGTTTGGATAATTTTATGGCCATTAAGGCCCTCAAGACAAGGAGGCATATGGAGCACAGGGAAAGGCACTGTCCTCGTTCTAGTCCCCACTGTTTGGTGCCCCTCCCCAATGGGTACAAAGTCCCGGTTAAATGGCCTAAGAGCAGGGACATGATTTGGTATGATAACGTTCCTCATACAAAGCTCGTTGAGTACAAGAAGGAGCAAAACTGGGTGGTGAAGTCTGAGGATTATCTTGTCTTTCCTGGAGGTGGTACTCAATTCAAAGAAGGAGTTAACCATTATACTAAATTCATAGAGGAGACACTACCAGCAATCCAATGGGGAAAGAATATCAGGGTTGTTCTTGATGTTGGTTGTGGAGTTGCTAGCTTTGGCGGCTATCTTTTGGACAAAAATGTTATAACTATGTCGTTTGCACCAAAGGATGAGCATGAAGCTCAGATACAGTTTGCTTTGGAACGAGGAATTCCTGCAACTCTTTCTGTCATTGGAACCCAAAAGTTGACATTTCCTGACAATGGATTTGATTTGATCCATTGTGCAAGATGCAGGGTGCATTGGGATGCAGATGGTGGGAAACCATTGTTTGAGCTCAATAGGATTCTTAGACCTGGTGGTTTCTTCGCATGGTCTGCAACACCAGTTTATCGTGATGATGAAAGAGATCGGAAAGTATGGAATGCCATGGTGACTGTAACAAAATCAATGTGTTGGACTGTTGTGGCTAAGACTCTTGATTCATCTGGAATTGGGCTGGTTATATACCAGAAGCCTACCTCATCTTCCTGTTATCAGGAACGCAAAGAGAGCACTCCTCCTTTATGTGAAAATAACGATAGGAAAAATATCTCATGGTATGCCAAACTCAGTGGCTGCCTTATACCTCTTCCGGTTGATGCTGAGGGTAACCTGCAGAGTTGGCCCATGCCTTGGCCCCTGAGGCTTACCGGTACACCTCCAAGCTTATCTATTGATTTGCATGCTGGCGACACGTTCTTCAATGACAGCAGACTCTGGTCTGAATTAGTTTCAGACGTTTATAGGGATGGTCTTTCTATAAACTGGTCAAGTGTTCGAAATGTAATGGACATGAATGCTGGTTATGCAGGATTTGCTACAGCACTCATTGATCTACCACTCTGGGTGATGAATGTGGTACCTATTGATATGCCAGATACTCTCACTACTATATTTGACAGAGGGCTAATAGGAATGTATCATGATTGGTGCGAGTCCTTTAATACCTACCCTCGCACTTACGATCTTGTTCATGCTAGCTTTCTCTTCAAACATCTTGTGAAAAGGTGTGACATTGTAGACGTGGCTGTGGAGATAGATCGTATATTGAGACCAGATGGGTATCTCCTGGTTCAGGATTCTATGGAAATGATTAACAAGATTGGTCCAGTGCTGCGTTCACTTCATTGGTCTGTAACATTGTATGAGAATCAGTTTCTTGTTGGTAGGAAGAGTTTCTGGCGTCCAGGGCCTTAG 1746 0.4324 MAISPVIFTFLVLLICVTILIFTNNATYTIDPIGFYPDVQPLAHFSSPTPQRQRLPLKGDPFLDDANIAWNLCKAPFAADYIPCLDNFMAIKALKTRRHMEHRERHCPRSSPHCLVPLPNGYKVPVKWPKSRDMIWYDNVPHTKLVEYKKEQNWVVKSEDYLVFPGGGTQFKEGVNHYTKFIEETLPAIQWGKNIRVVLDVGCGVASFGGYLLDKNVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPLFELNRILRPGGFFAWSATPVYRDDERDRKVWNAMVTVTKSMCWTVVAKTLDSSGIGLVIYQKPTSSSCYQERKESTPPLCENNDRKNISWYAKLSGCLIPLPVDAEGNLQSWPMPWPLRLTGTPPSLSIDLHAGDTFFNDSRLWSELVSDVYRDGLSINWSSVRNVMDMNAGYAGFATALIDLPLWVMNVVPIDMPDTLTTIFDRGLIGMYHDWCESFNTYPRTYDLVHASFLFKHLVKRCDIVDVAVEIDRILRPDGYLLVQDSMEMINKIGPVLRSLHWSVTLYENQFLVGRKSFWRPGP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00265 581 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 438 558 IPR029063 -
Cca01g00265 581 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 313 IPR029063 -
Cca01g00265 581 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 80 568 IPR004159 GO:0008168
Cca01g00265 581 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 5 579 IPR004159 GO:0008168
Cca01g00265 581 PANTHER PMT16, PUTATIVE-RELATED 5 579 - -
Cca01g00265 581 CDD AdoMet_MTases 198 292 - -
Cca01g00265 581 Gene3D Vaccinia Virus protein VP39 170 372 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00265 Cca-Chr1 2798151 2803525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00265 - - ccaj:109808177 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00265 01 2798151 2803525 Cca05g01625 05 35663291 35668198 PCT