Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00257 ATGCATGAAATAGCAAAAATGATGAAGCCACCATCTTACCTCTTCACTCTCTTAGCTTTCATTCTCTTCGCTTCCATCTTCTATGGCCATGACTTCTCCTTCATCTTTCGTCCACACTCCAACCATGAAACACAAACACTCTTCTCCTCACCCGAGGGAAACATGTACAAGAGAGAAACGAAAAGAGAGGAAGAAGAGGGATGTGACGTGTTCAACGGAAGGTGGGTACGCGACGAGTTGACTCGGCCGTTGTACGAGGAAGCGGAGTGTCCCTACATACAACCACAGTTAACGTGTCAAGAGCACGGTCGCCCGGAGAAGGAGTATCAACGGTGGCGCTGGCAGCCTCACGGTTGCGATCTTCCCATATTCAATGCTAGTTTGATGTTGGAAAAACTTCGAGGCAAGAGGATGATGTTTATTGGAGACTCCCTCAACCGGGGTCAATATGTCTCTTTGGTATGCCTTCTCCATCAACTCATTCCCGAACACGCCAAATCTATGGAATCCTTTGATTCACTCACTGTCTTTACAGCCAAGGAATACAATGCCACAATTGAGTTCTATTGGGCACCTTTTCTTCTTGAATCAAACTCCGATAACGCTGTCATTCATAGGGTATCTGATAGGATTGTGAAAAAGGGTTCAATCAATACGCATGGACGTCATTGGAAAGGTGCTGACATTGTTGTATTTAACACTTATCTTTGGTGGATAACTGGCTCTAAGATGAAGATTTTGTATGTTTCTCTACTTTACTTTATTCAACCAATTATTTACTTTCTTCCTCACTCGTTTCTTTGCCAATGCCATTGCAAAACATTGGCTAAAGTTCTCCAATTTTTTAGACATGGATCTTTTGATGATGAAGTAAAGGAGATTATTGAGATGTCAACAGAGGAAGCCTATCGCATGGCTCTGAAAAGTATGCTTAGATGGGTGAGGTTGAACATGGACTCCAACAAGACAAGAGTCTTCTTTACCAGCATGTCACCTTCTCATGCAAAGTATAAATTGTGGGGAACCATATTGTTAATGTATATATATGGCAGAAGCATAGAGTGGGGAGGTGAACCGGGAGGGAACTGCTACAACGAAACAACTCCAATTGATGATTCTGCATATTGGGGTTCTGATTGTAAACAAAGCATAATGCAAGTAATTGGAGAAGTATTTAGAAAATCTGAAGTACCTATTACTTTTCTCAACATTACCCAACTTTCAAACTATCGTAAAGATGCACACACATCAATTTACAAGAAACAATGGAACTCATTGACTCGAGAGCAATTAGCTAACCCTGTTAGTTATGCTGATTGTGTGCATTGGTGTTTGCCCGGACTTCCAGATACTTGGAATGAACTTCTGTTTGCTAAGTTTTTATATTCTTGA 1392 0.4145 MHEIAKMMKPPSYLFTLLAFILFASIFYGHDFSFIFRPHSNHETQTLFSSPEGNMYKRETKREEEEGCDVFNGRWVRDELTRPLYEEAECPYIQPQLTCQEHGRPEKEYQRWRWQPHGCDLPIFNASLMLEKLRGKRMMFIGDSLNRGQYVSLVCLLHQLIPEHAKSMESFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVIHRVSDRIVKKGSINTHGRHWKGADIVVFNTYLWWITGSKMKILYVSLLYFIQPIIYFLPHSFLCQCHCKTLAKVLQFFRHGSFDDEVKEIIEMSTEEAYRMALKSMLRWVRLNMDSNKTRVFFTSMSPSHAKYKLWGTILLMYIYGRSIEWGGEPGGNCYNETTPIDDSAYWGSDCKQSIMQVIGEVFRKSEVPITFLNITQLSNYRKDAHTSIYKKQWNSLTREQLANPVSYADCVHWCLPGLPDTWNELLFAKFLYS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00257 463 PANTHER PMR5 DOMAIN, PC-ESTERASE, PROTEIN TRICHOME BIREFRINGENCE-LIKE 32/46-RELATED 10 259 - -
Cca01g00257 463 PANTHER PMR5 DOMAIN, PC-ESTERASE, PROTEIN TRICHOME BIREFRINGENCE-LIKE 32/46-RELATED 286 462 - -
Cca01g00257 463 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 121 243 IPR026057 GO:0016740
Cca01g00257 463 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 287 458 IPR026057 GO:0016740
Cca01g00257 463 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 10 259 IPR029962 GO:0016413
Cca01g00257 463 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 286 462 IPR029962 GO:0016413
Cca01g00257 463 Pfam PMR5 N terminal Domain 67 120 IPR025846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00257 Cca-Chr1 2672924 2689135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00257 - - ccaj:109816567 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00257 01 2672924 2689135 Cca05g01632 05 35734537 35738398 PCT