Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00242 ATGATTTCACTTGATAATGGGATTGGAAATCCCAAAGATGAAATTGAGGAATCTAATGTGAGTGAAGTGAAGGAGTTTGCATCTATAGATATTTCAACAACAGACAAAACATTTCTGAGCAGTGAAGATCCTCAGAGTAAGCTTCAAGGCACCTTAAGTTCTTCTGTTCCTAATAGGATAAAGTTTCTTAAATTTGGTTCTGCATCTGCCAAATTCAAGAGGCTTGCTACTGAGAGAGATCAGGTTTCACTATCTGTGCCTTCTCGTCCAAAGAGCCTAAAAGCACGATTCAGTGGCTTGTTTGCTCAGAAGCTTGATGGGGGTTCAGTCAAGAAGATGTGCATGGAATGGATCAGAAGCCCGGTGAACATGGCACTTTTTATGTGGATCACCTGTGTCGCTGTTTCGGGTGCAATTCTGTTCCTTGTCATGACAGGCATGTTGAATGGTGTGATACCAAGAAAGTCTCAGAGAAATGCTTGGTTTGAAGTAAACAACCAAATACTCAATGCACTGTTTACACTCATGTGTTTGTACCAACATCCTAAGAGGTTCTACCACCTTGTTCTTCTGATCAGATGGAGACCAAATGACATCTCTAGACTAAGAAAGGTATACTGCAAGAATGGCACTTATAAGCCACATGAGTGTGCTCATATGATGGTAGTGATCATTCTCCTTCATGTTAACTGTTTTGCTCAATATGCACTCTGTGGTCTAAACATAGGGTATAAAAGGTCTGAGAGACCTGCCATTGGTGTTGGAATATGCATAACTTTTGCAATTGCTGCTCCTGCAGTTGCTGGCATGTACACTATTCTTAGCCCACTTGGGAAGGACTATGATTGTGAGATTGATGAAGAAGCACAGCTTCAAATTACTGCTTCTCAAAGGCAAGAGCAGCTTAGAGAGAAACCATTTGAGAAGAAATATTCATTTGCATCCAAAAATGAACAAAGGGTTGTTGAAAATAGACCAAACTGGAGTGGAGGAGTACTTGACATTTGGAACGATATTTCCTTAGCATATCTCTCACTTTTCTGCACCTTTTGTGTGTTTGGGTGGAATATGGAGAGGCTTGGCTTTGGAAACATGTATGTTCATATTGCCACTTTTATGCTGTTTTGTATGGCTCCTTTTTGGATTTTTGTTTTGGCTTCTGTTAACATAGATGATGACAATGTTAGGCAGGCTCTAGTAGTTTTTGGAATCATACTTTGTTTCCTTGGTTTACTTTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGATTCAATTTACCTGCCTATGACTTCTGTTTTGGCAAGACTTCAGTTTCTGATTGCACACTTTGGCTATGCTGTTGCTGGTGCTCTCTTGCTCAAGAAGCACGGACTGCAAATAACTATGATCTTGTAGAAGATAAAGATAAACTCTCTAGGAAAGAAATTGATACTGATGAACAGCCTTCAATTTCACCTTTGGCTCGGGAAGATGTAGTGTCAACCAAAACTGGACCTAGTTCTCCTATGGGTAGCAACACTTCTTATATGATAAAAACATCTAGTCCTTCAAATTCAAGCAATGTCTTAAAGGGATATTACAGTCCAGATAGAGTGCTATGTACTGTAAAAGAAGATAACTGTGAAAGAGGTAAAGATGGAATAATGAAGCCACCGGTTCCCTCAAGAATACAAAGAGAGACTCCTTAG 1692 0.3983 MISLDNGIGNPKDEIEESNVSEVKEFASIDISTTDKTFLSSEDPQSKLQGTLSSSVPNRIKFLKFGSASAKFKRLATERDQVSLSVPSRPKSLKARFSGLFAQKLDGGSVKKMCMEWIRSPVNMALFMWITCVAVSGAILFLVMTGMLNGVIPRKSQRNAWFEVNNQILNALFTLMCLYQHPKRFYHLVLLIRWRPNDISRLRKVYCKNGTYKPHECAHMMVVIILLHVNCFAQYALCGLNIGYKRSERPAIGVGICITFAIAAPAVAGMYTILSPLGKDYDCEIDEEAQLQITASQRQEQLREKPFEKKYSFASKNEQRVVENRPNWSGGVLDIWNDISLAYLSLFCTFCVFGWNMERLGFGNMYVHIATFMLFCMAPFWIFVLASVNIDDDNVRQALVVFGIILCFLGLLYGGFWRIQMRKRFNLPAYDFCFGKTSVSDCTLWLCCCWCSLAQEARTANNYDLVEDKDKLSRKEIDTDEQPSISPLAREDVVSTKTGPSSPMGSNTSYMIKTSSPSNSSNVLKGYYSPDRVLCTVKEDNCERGKDGIMKPPVPSRIQRETP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00242 563 MobiDBLite consensus disorder prediction 543 563 - -
Cca01g00242 563 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 327 461 IPR006461 -
Cca01g00242 563 PANTHER PLAC8 FAMILY PROTEIN-RELATED 19 561 - -
Cca01g00242 563 PANTHER - 19 561 - -
Cca01g00242 563 MobiDBLite consensus disorder prediction 475 520 - -
Cca01g00242 563 Pfam PLAC8 family 328 458 IPR006461 -
Cca01g00242 563 Pfam Protein of unknown function (DUF2985) 116 194 IPR021369 -
Cca01g00242 563 MobiDBLite consensus disorder prediction 489 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00242 Cca-Chr1 2514349 2516893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00242 - - gmx:100811964 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00242 01 2514349 2516893 Cca05g01649 05 35883948 35886728 PCT