Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00228 ATGAAATATGTAGCAACTCGAGATGTAAATTCATATGAACCAGTTGGAACTCCTGTTATCAAGGAGATGGATAAGGAAAATTGTGGAAATAATGTCAATGATCAAGAACAGATGATGCAAATTCCAAGTCCGTGCTCTATGTTATCATCACCTGATATGATCTTGATGGAGTTGAAACAAGCCAAATTGAATCTAGGCAAAACTATAAATGAACTTGGGGTGATACAATCCTCTGTTGAAACTTTgaataagaagatgaagaaggagaaAATTTTCTTGGAGAGGACACGGGAAAAGCTAGCATCAAAGTTTGCAGCTGTATCTGCTCAAGAGAGAGCCCAAGGTCAAACAAAATTAAATCCACCAGCATCTTATGTGGAATGCACCTTTGATAACCCTGCAAATATGATGAGGAATCTCAATTCTGATTCTGGGCAGTGCAATAGAATGGCTGAAACAAGAGCTGAACCTTCGAAGCCCTTAAGTGTGTATGAAGAATATGGATTTAGTGTTAAGACTGCTGAGATGAGGTGGCTTGCTGCTAAAAAGATGGAAGAAGCTGCAAGGGCAGCAGAAGCTATTGCTCTTGCTGAAATAAAGGCTCTATCCAATTATGAGAGATCTTCAGGATTTGTTCTGCCAGAACCTGAGAAAATCACTTTTGCTTTTGGACAACGCTCTCCCCTAAACTCCAAGGTTCGGATACCTGAGGAATCTACCTTGAAGAAGGTGATAGATCCCAAGTTTCGAGTTGAGGAAACAAATGTTTCTAAACTGACTATTTTGAAGAAGTTGCAGGAAGCATCAGAAGAGGTTCTACACAGCAAACGAGTCTTGACAGATGCTTTAAACAGAGTTGAAACTGCGAACAGAAAGCAGCATGCTGCCGAGGAGGCTCTGAGGAGATGGATTCCAGAGAGTGAACTCAAGGAGTATAATTCTGTTAATTGCAACAAGTTTGATCAAGCAGGAATTTGTCAAGATTCTTTGCAGGATGTAACCAGGTCAACGACTGCAAACAATGTTCCAAAGCCTGCTTTAAGGCCCACAATTTCAATGAGAGATGTACTTAGCAGAAAGCAGGTTCCTGAAGTATATGCTACAAGAAAGGAGATGGAAGAGCACACTGAAAGACAAAAGGTAGCGTTGAGTCAAATGCTACAAGCATTGAGGGAAGATCTAACTCTTCCAACAAAGACTGAGAAAGATGGTGGCGACCAGAAGCCGTTCATAGCACAGAGGAAGAAATTTGGATTCATTCAAATATCACTCCCCTTGACAAAGCCAAATAAGAAAAGGGCATGA 1305 0.4015 MKYVATRDVNSYEPVGTPVIKEMDKENCGNNVNDQEQMMQIPSPCSMLSSPDMILMELKQAKLNLGKTINELGVIQSSVETLNKKMKKEKIFLERTREKLASKFAAVSAQERAQGQTKLNPPASYVECTFDNPANMMRNLNSDSGQCNRMAETRAEPSKPLSVYEEYGFSVKTAEMRWLAAKKMEEAARAAEAIALAEIKALSNYERSSGFVLPEPEKITFAFGQRSPLNSKVRIPEESTLKKVIDPKFRVEETNVSKLTILKKLQEASEEVLHSKRVLTDALNRVETANRKQHAAEEALRRWIPESELKEYNSVNCNKFDQAGICQDSLQDVTRSTTANNVPKPALRPTISMRDVLSRKQVPEVYATRKEMEEHTERQKVALSQMLQALREDLTLPTKTEKDGGDQKPFIAQRKKFGFIQISLPLTKPNKKRA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00228 434 Pfam Weak chloroplast movement under blue light 55 308 IPR008545 -
Cca01g00228 434 Coils Coil 83 103 - -
Cca01g00228 434 Coils Coil 279 299 - -
Cca01g00228 434 PANTHER WEB FAMILY PLANT PROTEIN 1 433 - -
Cca01g00228 434 Coils Coil 373 393 - -
Cca01g00228 434 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00228 Cca-Chr1 2376154 2379396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00228 - - gmx:100776514 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00228 01 2376154 2379396 Cca05g01663 05 36006286 36023292 PCT