Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00085 ATGGCCAAGACTGAGATCGATACGAAGTTTGAGAGCAATGACAAAGAACTAAAGCACTTGTGGTTTGTGAGGATTGCTGCTATTCAAACTTATGTGTTTGTGTCAAATCTATATGAGTACGCAAAGCAGAACTCTGGGCCTTTGAGATCCACTGTTGGAACGGTGGAGAACACTGTAACCACCGTTCTTGGTCCTGTCTGCAACAAATTCAAGGACGTCCCTGATGATGTCCTGGTTTTTGTTGACAACAAGGTGGATGAAGCTTCTCACAAGTTTGATGTGCATGCTCCTCCTTTTGCTAAGCAGCTTGCCGATAAGGCCAAGAGTTTGATTCAGAAACTGACACACGAGGCAGAGAAAGTGGCAAGTGAAGCTCAATCCGGGGGGCCACGAGCAGCTGTACACTACGTTGCTACAGAGTCGAAGCATTTTCTGTTGATAAATTCAGTGAAGTTGTGGGCTGGGCTCAACCACTATCCACCATTCCATGCTTTGGCTGATATGGCAGTTCCCACTGCTGCTCACTGGTCAGAGAAGTATAACCATGTGATTAAGGTCATGACTCAAAAGGGTTACAGTTTCGTTGGGTATCTACCTTTGATTCCCATTGATGAGATAGCCAAGGCATTTAAGCAGGGAGAGGCTAACTTGAAAAAAGATGATGCAGCCTCTGCGGATCAGAGATCAGAATCATCATCATCTGATTCTGATTAA 714 0.451 MAKTEIDTKFESNDKELKHLWFVRIAAIQTYVFVSNLYEYAKQNSGPLRSTVGTVENTVTTVLGPVCNKFKDVPDDVLVFVDNKVDEASHKFDVHAPPFAKQLADKAKSLIQKLTHEAEKVASEAQSGGPRAAVHYVATESKHFLLINSVKLWAGLNHYPPFHALADMAVPTAAHWSEKYNHVIKVMTQKGYSFVGYLPLIPIDEIAKAFKQGEANLKKDDAASADQRSESSSSDSD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00085 237 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 2 235 IPR008802 -
Cca01g00085 237 Pfam Rubber elongation factor protein (REF) 12 212 IPR008802 -
Cca01g00085 237 Coils Coil 104 124 - -
Cca01g00085 237 MobiDBLite consensus disorder prediction 217 237 - -
Cca01g00085 237 PANTHER RUBBER ELONGATION FACTOR-RELATED 2 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00085 Cca-Chr1 886941 889956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00085 - - gmx:100816931 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00085 01 886941 889956 Cca09g01773 09 42311186 42312666 PCT