Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00079 ATGAAGCAGCAAAGTGGAATGAGGGGGTtgggcttgggcctgggcctgggcctgggcctgTTAGTGTTGATGCTATGCTTGTCGAGGAGCGCGGCGGAAGACTTGAGCTCGGAGTGTTCGAAGGTGGTGGAGAAGGTGATACCGTGTCTGAACTTCGCGACGGGGAAGGAGGCGACGCCGAAGAAGGATTGTTGCGATGCGATGGGGAGCATGAAGGAGACGAACCCGGAGTGCTTGTGCTTCGTCATTCAGGAGACTCACAAGGGAAGTCCTCAGGTCAAAAGCTTGGGCATTCAAGAGGACAAGCTCCTTCAGCTCCCTTCTCTTTGTAACCTCAAAAACGCCACCGTTACTAACTGTCCTAAGCTTCTAGGGCTATCTCCCAACTCCCCCGATGCTGCTATCTTCACAAATTCGTCAAAGGCAACTCCATCATCAGCGACCCCACAAAGTAGTACCCCAATGAGCCAGAATGTTTCATATGGAAACATGGTTAGACCTAGAAGCGTTACCCATGTGATGATGGTGGCTTTGGCCATTGTTGTGGTTGCAGTTCCAAGTGGATTTGTGAGCATAATTTATACATGA 588 0.4728 MKQQSGMRGLGLGLGLGLGLLVLMLCLSRSAAEDLSSECSKVVEKVIPCLNFATGKEATPKKDCCDAMGSMKETNPECLCFVIQETHKGSPQVKSLGIQEDKLLQLPSLCNLKNATVTNCPKLLGLSPNSPDAAIFTNSSKATPSSATPQSSTPMSQNVSYGNMVRPRSVTHVMMVALAIVVVAVPSGFVSIIYT 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00079 195 MobiDBLite consensus disorder prediction 135 160 - -
Cca01g00079 195 Pfam Probable lipid transfer 31 120 IPR016140 -
Cca01g00079 195 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 22 185 IPR043325 -
Cca01g00079 195 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 22 185 - -
Cca01g00079 195 CDD AAI_LTSS 48 112 - -
Cca01g00079 195 Gene3D - 36 118 IPR036312 -
Cca01g00079 195 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 38 120 IPR036312 -
Cca01g00079 195 SMART aai_6 39 120 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00079 Cca-Chr1 818261 820806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00079 37 185 Acyl Lipid Metabolism Gene Families AT1G27950 49.677 3.54e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00079 - - gmx:100499777 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00079 01 818261 820806 Cca09g01779 09 42403616 42406282 PCT