Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g01787 | ATGGAAATTGAAACAAACCAATCAATTGTAGCAAAAAAAGTATGGAAGACAATACGCATCATTTTGTTCATGTTAAGGAAAGTCATAGCCAAGAGCAAAGTGATATCCGAATTAAATCTCTTGGTTAAACGTGGCAAAATTGCGGCGGTCAAAGCCATCACAAACGCTCTCACTCTCCGCCACTACTCCTCGGCCGCCGTCTCATCCTTTGTATCTCCCCATGATTACGACTTTAGTTGTAGCAACAGTCCGACCGTCATTAAATTCCACAACAAAAAGAAGAacaaccaccaccgctaccaccaccaccaGTGCCACGATGTTTCCACCGTTCAAAAGGTTCTAGAGATTCTCAATGACATGGAAActtcttctttttcttctccttctCCGCTAGTGGCATTGTCGGGATTTGACAAAAGCCCTATTGGAAAAAAACAACTTAGAATCACAGATTCGCCGTTTCCTTTAAAGGAAGAGGAAGGAGAAGATTATAGTCACGTGGATATTGCGGCTGAAGAATTTATTAAGAGATTCTATAAGAATCTCAACTTGCAAAAAGAATTGGCTTCTATTCAATCGCCTTACCACAACTCTTGGAACAAATAG | 609 | 0.3695 | MEIETNQSIVAKKVWKTIRIILFMLRKVIAKSKVISELNLLVKRGKIAAVKAITNALTLRHYSSAAVSSFVSPHDYDFSCSNSPTVIKFHNKKKNNHHRYHHHQCHDVSTVQKVLEILNDMETSSFSSPSPLVALSGFDKSPIGKKQLRITDSPFPLKEEEGEDYSHVDIAAEEFIKRFYKNLNLQKELASIQSPYHNSWNK | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g01787 | 202 | Pfam | Cotton fibre expressed protein | 167 | 201 | IPR008480 | - | |
| Car08g01787 | 202 | PANTHER | AVR9/CF-9 RAPIDLY ELICITED PROTEIN | 7 | 202 | - | - | |
| Car08g01787 | 202 | PANTHER | AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED | 7 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car08g01787 | Car-Chr8 | 27855777 | 27857005 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g01787 | - | - | mtr:MTR_0016s0050 | 229.565 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car08g01787 | 08 | 27855777 | 27857005 | Car07g03171 | 07 | 59194393 | 59195426 | ECH | |
| Car08g01787 | 08 | 27855777 | 27857005 | Car01g02753 | 01 | 52928560 | 52929426 | ECH | |
| Car08g01787 | 08 | 27855777 | 27857005 | Car08g01787 | 08 | 27855777 | 27857005 | ECH | |
| Car06g00331 | 06 | 3544542 | 3545617 | Car08g01787 | 08 | 27855777 | 27857005 | PCT |