Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01654 ATGGGGATCCCTGGATTGAGCAATCAGAATAATGGGAAGCAATGGTTAGGCATAACTGAGCCTATTTCATTGGCTGGACCAACTGAGGAAGATGTTGTCAAGTCTCAAGAACTTGAAAAGTATTTGCAAGGTGCTGGATTGTACGAGAGTCAGCATGAAGCGGTTGGTAGGGAGGAAGTTCTTGGCAGACTAGACCAGATTGTGAAGATTTGGGTTAAAACAATTAGCCGGGCGAAGGGATTCAATGAACAACTGGTGCACGAAGCAAATGCCAAGATTTTTACTTTTGGCTCATATCGGCTAGGGGTGCATGGCCCTGGAGCTGATATAGATACTCTTTGTGTAGGACCTAGACATGCAACCAGAGAAGAAGATTTCTTCGGTGAGTTGCGTAAGATGCTATCTGAGATGGAGGAAGTAACTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTCATGAAATTCAAGTTCAATGGAATTTCTGTAGATCTCTTGTATGCAAGATTGGCATTGTGGGTTATTCCCGAAGACTTAGATATATCGCAGGAATCAATATTACAAAATGCGGATGAACAAACTGTTCTCAGTCTCAATGGGTGTAGAGTAACTGATCAAGTCCTGCGTTTAGTTCCAAATATTCAGAATTTTCGCACGACATTGAGATGCATGAGGTTTTGGGCAAAGCGCCGTGGTGTTTATTCTAATGTTGCTGGTTTTCTTGGTGGTATCAACTTGGCATTGCTTGTTGGTCGAATATGCCAGCTTTATCCTAATGCACTACCTAATATGTTGGTGTCTCGTTTCTTTAGAGTATATACTCAGTGGCGATGGCCGAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTTTCAGTTTGGGATCCTAGAAGAAATCCCAAGGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCGTGCATGAACTCTACTTACAATGTGACGTTAAGTACACTCCGTATAATGTCGGAGGAGTTTAAGAGGGGAAGTGAAATATGTGAGGCTATGGAGGCTAGTAAGGCTGATTGGGATACACTTTTTGAGCCTTATCCCTTTTTTGAAGCCTACAAGAATTACCTTCAGATAGACATTACAGCAGAGAACGCAGACGACCTTAGACAATGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAGTTGACATTAAAGATTGAGAGGTACACTTATGGTATGCTTCAGTGTCATCCATATCCTGGCGAATTTTCAGACAAATCTCGAACCTTCCACCAATGTTACTTTATGGGTCTGCAACGTAAGCAAGGAGTTCCTGTAAACGAAGGTGAACAATTTGATATAAGACTAACCGTAGAAGAATTCAAGCATTCTGTCAACGCGTACACTCTATGGAAACCTGGAATGGACATCCACGTCTCCCATGTGAAACGCCGTAATATACCAAACTTCATATTTCCCGGCGGGGTTCGACCTTTGTTGCCATCTAAAGCAACCGGTGAGAATAGACAAAGTTCCAAATCAAGGGTTTCTGGCCACAGTCAAGCTGAAAAATCTCAAGGAGGTAAAGCGGCAACAAATGAAGCAAGGAAGAGAAAACGATCGGAGGAAAACGTGGAAAATAATAACTCGAAGATTTCAAAGTCTTTTGTATCGTTATCCCCTCCCAACAAGGAAGTTCATGAAGATATAACTCCTATCATCAGTGTTACTAGCTCTTGTTCGATGAAATTCGATGACTCTGAAGTCAACAGTATCAGTGCACAAAAGAGTGAGAAACCTTGTCTGAAATTGGTTGGGGAGATTCCTTCAGGTGATAGTCAAGCCTATGGATCAGTGATGGGAAACCAACAACTTACTGCTCCTGATGCGTCGAACACTAAAGAAGAAGAAAGACTAGCCATTGAGCAAATTATGTCTGGTCCGTATGAAGTGCATCAAGCTTTGGCAGAAGAATCTGATGAGCTTGAAGATGATATGGGGTATAGAAATCAAGTCAAAGATAACGGTGGGAGCGTGAAAAGCAATAATTTTGACATTTCAATCCCAAAGTTTGTAGTGGCGGAAGAGCAAGTTATTCCAAAGGAAACCATATGTTCGACTCATTTGTTCTCTAATGGAGGCTTGGATGAGCTTGAGCCTGCTGAGCTGACAGCACCATTGTTATGTGGAATTCCTGCTCCTGTACCACAGAGGAAACCTCTTATCAGGTTGAACTTCACTTCCTTAGGGAAAGCATTGGATAAAAGTTCTTAA 2262 0.4244 MGIPGLSNQNNGKQWLGITEPISLAGPTEEDVVKSQELEKYLQGAGLYESQHEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELRKMLSEMEEVTELHPVPDAHVPVMKFKFNGISVDLLYARLALWVIPEDLDISQESILQNADEQTVLSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVWDPRRNPKDRYHLMPIITPAYPCMNSTYNVTLSTLRIMSEEFKRGSEICEAMEASKADWDTLFEPYPFFEAYKNYLQIDITAENADDLRQWKGWVESRLRQLTLKIERYTYGMLQCHPYPGEFSDKSRTFHQCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNAYTLWKPGMDIHVSHVKRRNIPNFIFPGGVRPLLPSKATGENRQSSKSRVSGHSQAEKSQGGKAATNEARKRKRSEENVENNNSKISKSFVSLSPPNKEVHEDITPIISVTSSCSMKFDDSEVNSISAQKSEKPCLKLVGEIPSGDSQAYGSVMGNQQLTAPDASNTKEEERLAIEQIMSGPYEVHQALAEESDELEDDMGYRNQVKDNGGSVKSNNFDISIPKFVVAEEQVIPKETICSTHLFSNGGLDELEPAELTAPLLCGIPAPVPQRKPLIRLNFTSLGKALDKSS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01654 753 Gene3D - 17 359 - -
Car08g01654 753 Pfam Nucleotidyltransferase domain 77 170 IPR002934 GO:0016779
Car08g01654 753 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 715 - -
Car08g01654 753 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Car08g01654 753 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Car08g01654 753 PANTHER POLY A POLYMERASE 1 715 - -
Car08g01654 753 MobiDBLite consensus disorder prediction 497 560 - -
Car08g01654 753 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Car08g01654 753 CDD NT_PAP_TUTase 57 211 - -
Car08g01654 753 MobiDBLite consensus disorder prediction 526 543 - -
Car08g01654 753 Pfam Poly(A) polymerase predicted RNA binding domain 364 424 IPR007010 GO:0003723|GO:0043631
Car08g01654 753 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Car08g01654 753 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Car08g01654 753 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Car08g01654 753 MobiDBLite consensus disorder prediction 500 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01654 Car-Chr8 26354593 26362013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01654 K14376 - gmx:100816915 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01654 08 26354593 26362013 Car06g00196 06 2146317 2152225 ECH
Car08g01654 08 26354593 26362013 Car08g01654 08 26354593 26362013 ECH