Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00196 ATGGGGAGCAGTGGTGTAAGCAACCAAACAAAAGAGAAGCCGCCATGGTTAGGGATATCGGAACCCATCTCATTGAGTGGACCAAGTCAATATGATGTCGCCAAGACTCGAGAACTCGAGAAGTACTTGCAAGAAGCCGGTTTCTATGAGAATCAAGAGGAAGCAATTAATATGGAGGAAGTGCTAGGCAGACTAGATCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCGAAGGGATTTAACGAACAAATGGTGCAAGAAGCAAATGCCAAAATATTTACTTTTGGGTCATATCGGTTAGGGGTGCATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCTAGACATGCAACCAGAGATgaagatttctttggtgagctacataaaatgctatttgagatGCCAGAAGTGAGTGAGATGCACCCTGTGCCTGATGCTCACGTTCCAGTGATGAATTTCAAGTTCAATGGCATCTCTATAGATCTCCTTTATGCAAATTTATCTCTGTGGGTTATTCCTGAAGACTTGGATATATCACAGGAAGCAATATTACAAAATGTAGACGAACAAAGTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGTACCACACTGAGATGCATGAAGTTATGGGCTAAGCGTCGTGGCATTTATTCAAATGTTGCAGGTTTTCTCGGTGGTGTAAACTGGGCATTGCTTGTTGCTCGAATCTGCCAGCTATTTCCAAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATATACTCAGTGGCGTTGGCCAAACCCAGTTATGCTATGTGTTATTGAAAAAGGATCTCTTGGATATCAAGTTTGGGATCCTAGATGGAATCCCAAGGATAAATTGCATCTCATGCCCATTATTACTCCTGCCTATCCTTGCATGAATTCTAGCTACAATGTGTCCTCAAGCACCTTGTGTGTTATGACCGAGGAGTTTCAAAGAGGAGATCAAATATGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGACACTCTTTTTGAGTTCTATCCCTTTTTTGAAGCTTATAAGAATTATTTGCAGATAGACATTTCAGCTGACAATGCTGATGATCTTAGAAATTGGAAAGGATGGGTTAAGTCTCGCTTGCGTCAGTTGACATTGAAGATTGAGAGGCACACTTACGGGATGCTTCAGTGTCATCCAAATCCTGATGAGTTTTCAGACAAATCTAGACCTCTACACTGCTCTTACTTCATGGGTTTGCACCGTAAGCAAGGAGTTCCTGTCAGCGAAGGCGAACAATTTGACATAAGACTAACTGTTGAAGAATTTAAGCATTCTGTCAATCTGTACACTCTGTGGAAACCTAGAATGGATATCTCCGTCTCCCATGTGAAACGCCATAATATACCTGCCTTTGTATTTCCTGGTGGCGTTCGGCCTAACCGCCCATCCAAAGTAACCTGGAAGAGTAAGCTTAGGACTTCCGGCCATGATGATAGGAAGAGAAAGCAAGCAGAGGATAGTGTGGATGACTTTACCAATTCCAAGCCCTTTTCATCTTTGCCTCCCTCCAGCAGGGCAGTTCATGAAGATGGAAATCCGGTCAGCATTGCTAGTTCTTGCTCTGTGAAATGTGATGACAAAGAAGTCAACAGCATGAGTGAACAAAAGAGTGAGAAACCTGATTTTAATTCATCAGGGGAGAATCCTTCTGGGGATAGAGAGACCAATGGATCAGAGAAATGCAACTCACAATCAAACCCTGAGACTGTAGTAGCAGCAGAACCAGTGTTTTCTCAAAAGGAAAATAGTAGTTCAACTCTTATATACTCTAATGAGGGCTTGGAGGAGCTTGAGCCCGCTGAGCTGACAGCGCCATTGTTAAGTGTGAATCCTGCACCAGTGCCACAGCGGAAGCCCCTTATTAGGTTGAATTTCACATCCCTGGGGAAAGCTGCTGACAAAAGTTCTTAA 2019 0.425 MGSSGVSNQTKEKPPWLGISEPISLSGPSQYDVAKTRELEKYLQEAGFYENQEEAINMEEVLGRLDQIVKIWVKTISRAKGFNEQMVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELHKMLFEMPEVSEMHPVPDAHVPVMNFKFNGISIDLLYANLSLWVIPEDLDISQEAILQNVDEQSVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGIYSNVAGFLGGVNWALLVARICQLFPNALPNMLVSRFFRVYTQWRWPNPVMLCVIEKGSLGYQVWDPRWNPKDKLHLMPIITPAYPCMNSSYNVSSSTLCVMTEEFQRGDQICEAMEANKADWDTLFEFYPFFEAYKNYLQIDISADNADDLRNWKGWVKSRLRQLTLKIERHTYGMLQCHPNPDEFSDKSRPLHCSYFMGLHRKQGVPVSEGEQFDIRLTVEEFKHSVNLYTLWKPRMDISVSHVKRHNIPAFVFPGGVRPNRPSKVTWKSKLRTSGHDDRKRKQAEDSVDDFTNSKPFSSLPPSSRAVHEDGNPVSIASSCSVKCDDKEVNSMSEQKSEKPDFNSSGENPSGDRETNGSEKCNSQSNPETVVAAEPVFSQKENSSSTLIYSNEGLEELEPAELTAPLLSVNPAPVPQRKPLIRLNFTSLGKAADKSS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00196 672 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Car06g00196 672 Pfam Poly(A) polymerase central domain 18 361 IPR007012 GO:0004652|GO:0043631
Car06g00196 672 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 610 - -
Car06g00196 672 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Car06g00196 672 MobiDBLite consensus disorder prediction 506 525 - -
Car06g00196 672 CDD NT_PAP_TUTase 59 212 - -
Car06g00196 672 PIRSF PolyA_polymerase 4 628 IPR014492 GO:0004652|GO:0005634|GO:0043631
Car06g00196 672 MobiDBLite consensus disorder prediction 1 23 - -
Car06g00196 672 Pfam Nucleotidyltransferase domain 79 138 IPR002934 GO:0016779
Car06g00196 672 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Car06g00196 672 MobiDBLite consensus disorder prediction 498 621 - -
Car06g00196 672 PANTHER POLY A POLYMERASE 1 610 - -
Car06g00196 672 Pfam Poly(A) polymerase predicted RNA binding domain 365 424 IPR007010 GO:0003723|GO:0043631
Car06g00196 672 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 361 - -
Car06g00196 672 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Car06g00196 672 Gene3D - 18 360 - -
Car06g00196 672 MobiDBLite consensus disorder prediction 572 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00196 Car-Chr6 2146317 2152225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00196 K14376 - gmx:100816915 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01654 08 26354593 26362013 Car06g00196 06 2146317 2152225 ECH
Car06g00196 06 2146317 2152225 Car06g00196 06 2146317 2152225 ECH