Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01119 ATGGCCGACGGCTTCTGGTACCGGCAGCAGCAACAGCAGCATCACTCACTTCATCCCCACTCCGGCCAGGTCAAACGACCGCGTTCCGATTACGAAATGGCAGCTTCTGGTATGCCTACAGGCAATGAGATGCATAATTATCTTGCTCACGATGATGACCGTTCTGGTCACCAAGCGGTAAAGGACACAAAAACAATTGGATCTGCTTATGATCGCTACCTTCAGAGTGGGCAACTCTCTTCATTTACTTCTGGGGAAGCCAGTACAATTGGTGGTCTTGGATTGCCAAGGGGTGTTGGTGGATTACCAAACCATTCCCTAGGTGATCCTGCTGTCATGGGGCGTCATGGGGGTCCTGATCTTGCACCAAATGGACGGGGTATTAATTATGGTTTTCAGCCACCGATGGACGCAATGTCCAGGCCTGGACCCGAGACAGCACTCCTACCCCCAGATGCTTCAAGTACTTTATATATTGAAGGTCTGCCTTCTGATTGCACAAGAAGGGAAGTGGCTCATATTTTCCGCCCTTTTGTTGGATATAGAGAAGTGAGACTTGTAAGCAAAGAGGCCAAACATCGTGGAGATCCTCTGATCCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTTTGAGTGCCTTGCAAGGTTATAAAGTCGATGAAATCAGTCCCGAGTCTAGTCATTTGCGGCTTCAATTTTCTCGGTATCCTGGTCCAAGAGGTGGAGCTGGTCCGAGAAGTGGACCTGGTCCAAGAAGTGGACCTGGATCTCGTGGTAAGAGGTGA 798 0.495 MADGFWYRQQQQQHHSLHPHSGQVKRPRSDYEMAASGMPTGNEMHNYLAHDDDRSGHQAVKDTKTIGSAYDRYLQSGQLSSFTSGEASTIGGLGLPRGVGGLPNHSLGDPAVMGRHGGPDLAPNGRGINYGFQPPMDAMSRPGPETALLPPDASSTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGDPLILCFVDFANPACAATALSALQGYKVDEISPESSHLRLQFSRYPGPRGGAGPRSGPGPRSGPGSRGKR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01119 265 PANTHER RNA-BINDING PROTEIN 2 11 250 - -
Car08g01119 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 224 IPR000504 GO:0003723
Car08g01119 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 250 - -
Car08g01119 265 Gene3D - 151 240 IPR012677 -
Car08g01119 265 MobiDBLite consensus disorder prediction 1 37 - -
Car08g01119 265 SUPERFAMILY RNA-binding domain, RBD 134 254 IPR035979 GO:0003676
Car08g01119 265 SMART rrm1_1 156 229 IPR000504 GO:0003723
Car08g01119 265 MobiDBLite consensus disorder prediction 232 265 - -
Car08g01119 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 240 IPR000504 GO:0003723
Car08g01119 265 MobiDBLite consensus disorder prediction 1 18 - -
Car08g01119 265 CDD RRM_RBPMS_like 155 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01119 Car-Chr8 11500124 11508974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01119 - - cam:101512502 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01119 08 11500124 11508974 Car04g01135 04 11583743 11585532 PCT