Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00299 ATGGACACAGGTAGTGACCTTGTTTGGTTCCCTTGTTCTCCATTCGAATGCATTCTCTGTGAAGGAaaaccacaaacgacaaaaccagcaaacatcactaaagcacaCTCTGTTTCGTGTCAATCCCCTGCATGTTCTGCATCACACTCAACTATGTCGTCAAGTGATCTTTGTGCTATTTCTCGTTGTCCCTTAGACTTCATTGAAACTTCTGATTGTTCTTCTTTCTCTTGTCCTCCTTTTTACTATGCTTATGGCGATGGAAGCTTCGTCGCTAATCTCTATCGACACACACTTTCTCTCTCTTCTCTTCATCTTCATAACTTTACGTTCGGTTGTGCTCACACCGCTCTCGCTGAACCCACCGGCGTCGCCGGTTTTGGCCGTGGAATTCTGTCTCTCCCTGCTCAACTTGCAACTCTTTCTCCGAGTTTGGGGAATCGTTTTTCTTATTGTTTGGTTTCTCATTCTTTCGACGGTGACCGAGTTCGTCGACCGAGTCCACTCATTCTCGGTCATTACGAATCCACCGGAGAATCTGTTGAGTTTGTTTACACTTCCATGCTTTCGAATCCCAAGCACCCTTATTTCTACTGCGTGGGGCTCGCCGGAATATCCGTCGGGAAACGAACGGTGCCGGCGCCGGATAATTTAAAGAGAGTCGACGGTAAAGGTAACGGAGGGATGGTTGTTGATTCAGGGACGACTTTTACGATGTTGCCGGATAGTTTTTACAACTCGGTGGTCACTGAGTTCGATAACCGAGTTGGGCGAGTTCACAAACGCGCGAGTGAGATTGAAGCTAAAACGGGTATCGGGCCGTGTTATTATTTAAACGGGTTATCACAGATACCCGTGTTGAAGTTGCATTTTGTTGGGAATAATTCGGATGTGGTGTTGCCTAGGAAGAATTATTTTTACGAGTTTATGGACGGTGGTGATGGAGTGAGAAAGAAGGGGAAAGTTGGGTGCATGATGCTAATGAACGGCGGTGATGAAACTGAATTGGATGGTGGACCTGGGGCTACACTTGGAAATTACCAACAGCAAGGGTTTGAGGTTGTGTATGATTTGGAGAAACAGCGCGTGGGTTTTGCTAAGAGACAGTGTGCGTTGCTTTGGGATAGCCTCAACGGTGATAAAAACTAG 1149 0.45 MDTGSDLVWFPCSPFECILCEGKPQTTKPANITKAHSVSCQSPACSASHSTMSSSDLCAISRCPLDFIETSDCSSFSCPPFYYAYGDGSFVANLYRHTLSLSSLHLHNFTFGCAHTALAEPTGVAGFGRGILSLPAQLATLSPSLGNRFSYCLVSHSFDGDRVRRPSPLILGHYESTGESVEFVYTSMLSNPKHPYFYCVGLAGISVGKRTVPAPDNLKRVDGKGNGGMVVDSGTTFTMLPDSFYNSVVTEFDNRVGRVHKRASEIEAKTGIGPCYYLNGLSQIPVLKLHFVGNNSDVVLPRKNYFYEFMDGGDGVRKKGKVGCMMLMNGGDETELDGGPGATLGNYQQQGFEVVYDLEKQRVGFAKRQCALLWDSLNGDKN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00299 382 ProSiteProfiles Peptidase family A1 domain profile. 1 366 IPR033121 -
Car08g00299 382 Pfam Xylanase inhibitor N-terminal 1 156 IPR032861 -
Car08g00299 382 Gene3D Acid Proteases 1 172 IPR021109 -
Car08g00299 382 Gene3D Acid Proteases 173 373 IPR021109 -
Car08g00299 382 Pfam Xylanase inhibitor C-terminal 198 366 IPR032799 -
Car08g00299 382 PANTHER ASPARTYL PROTEASES 1 379 IPR001461 GO:0004190|GO:0006508
Car08g00299 382 SUPERFAMILY Acid proteases 1 375 IPR021109 -
Car08g00299 382 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 229 240 IPR001969 GO:0004190|GO:0006508
Car08g00299 382 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 1 379 - -
Car08g00299 382 CDD pepsin_A_like_plant 71 370 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00299 Car-Chr8 2356295 2358232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00299 1 373 Miscellaneous Gene Families AT1G44130 23.291 3.78e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00299 - - gmx:100807884 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00299 08 2356295 2358232 Car08g00299 08 2356295 2358232 ECH
Car08g00299 08 2356295 2358232 Car07g01240 07 11238782 11240698 PCT