Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00288 ATGGGGAGAACAAATGAATGTAATGATGTCGAATGTTCTTATGTTCCGGTATCCGACGAACTCCACGCCACGGGACCTTCCGCTGTTTTACGCGGAAGGTCGAAGACCGTGGTTGCGGTATTTTGGGGGATGTTGGTTGTGGTTTCATTGGTGGCATTGACATCAAATGGAAATATTGATCATGTGTCAACATCAGCATCAACAAATAAAGATTTGAATACAGAAACATTACCTGCACGTGGTGTATGTGCAGGAGTGTCCGAGAAATCAAATACTAGGTTGTTCACTAACAACAACAATGGTGAATGGTTTCCTTGGAACAATAGTATGCTTTCATGGCAGAGAACCGCTTTTCATTTCCAACCCGAGAAGAATTGGATGAATGATCCTAATGGTCCATTGTACTACAAGGGATGGTATCACTTCTTCTACCAATACAATCCAAACGGTGCAGTTTGGGGTGACATAGTATGGGGACATGCTGTTTCAAGAGACTTAATCCATTGGTTTCATCTTCCACTAGCAATGGTAGCAGATAAATGGTACGATCAAAAAGGTGTGTGGACAGGTTCAGCTACAATCTTACCCAATGGTGAAGTTATCATGTTATACACAGGTGCCACAAATGAATTAGTACAAGTTCAAAACCTTGCTTATCCTTCTGACCCTTCTGATCCACTTCTTATTGATTGGATCAAATATCCTAAAAATCCTGTTCTATTCCCACCCCCTGGAATCAATGTCCATGATTTTCGTGACCCTACAACTGCTTGGTTAACCTCTCAAGGTAAATGGCGTATCTCTATTGGTTCCAAGATTAATAAAACTGGAATTGCTTTGGTTTATGAGACTCAAGATTTTAGGACATTTGAGCGAGTCGAGGGTGTGCTTCGTGCTGTGCCTAAAGTTGGTATGTGGGAGTGTGTTGATTTTTACCCTGTCTCTACTAAGTTGGAAAAGGGTTTGGATACTTCTGCTTATGGGGTTGATGTGAAGCATGTTATGAAGGTTAGTTTGGATGATGATAGACATGATTATTATACTATTGGGAATTATGAAGAAAATGGTGCTGATTTTGTACCTGATGATATTCAAAATGATGTTGGTATTGGATTGAGGTATGATTATGGTATATTTTATGCATCCAAGACATTTTATGATCAAAATAAAGAGAGAAGAGTGTTGTGGAGTTGGATTGGAGAGTCTGATAGTGAATATGCTGATGTAACTAAAGGTTGGGCATCTGTTATGGGTATTCCAAGGACAGTGGTGCTTGATAAAAAAACTGGTAGCAACTTGCTTCAATGGCCTGTTGAGGAGGTGGAGAGTTTGAGATTGAAAAGTAACAAGTTTGAAAATTTGAAGGCAATGCCAGGGTCAGTGGTGTCACTAGATATTGAAACAGCAACACAGTTGGACATTGTTGCTGAGTTTGAGATTGATAAGGAAGCAATAGAAAAGACAGACCAAACCAATGAAGAGTACAATTGCAAGACCAGTGGTGGAGCTGCTCATCGTGGCGCCTTAGGGCCTTTTGGTCTATTGGTTCTGGCAAATGATGGCCTTTCTGAATATACTCCCATCTACTTCTATGTTGTTAAAGGAAATGATGGAAATCTCAAAACTTCCTTCTGCTCTGATCAATCAAGGTCTTCATTGGCAACTGATGTTGATAAGAGTGTCTTTGGAAGCTTTGTTCCAGTACTTGAAAATGAGAAGCTATCTTTAAGAATATTGGTGGACCATTCTATAGTTGAAAGTTTTGCTCAAGGTGGAAGGACAACAGTGACTTCTCGAGTTTATCCAACAAGGGCAATCTATGGAGATGCTAAGTTGTTCTTGTTTAATAATGCTACTGAGGCCACAGTTACTGCTTCACTCAAAGTTTGGCAAATGAACTCTGCATTCATAAAGCCATTCAGCCCTGAGCAAAGGAGTTAA 1941 0.4019 MGRTNECNDVECSYVPVSDELHATGPSAVLRGRSKTVVAVFWGMLVVVSLVALTSNGNIDHVSTSASTNKDLNTETLPARGVCAGVSEKSNTRLFTNNNNGEWFPWNNSMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDLIHWFHLPLAMVADKWYDQKGVWTGSATILPNGEVIMLYTGATNELVQVQNLAYPSDPSDPLLIDWIKYPKNPVLFPPPGINVHDFRDPTTAWLTSQGKWRISIGSKINKTGIALVYETQDFRTFERVEGVLRAVPKVGMWECVDFYPVSTKLEKGLDTSAYGVDVKHVMKVSLDDDRHDYYTIGNYEENGADFVPDDIQNDVGIGLRYDYGIFYASKTFYDQNKERRVLWSWIGESDSEYADVTKGWASVMGIPRTVVLDKKTGSNLLQWPVEEVESLRLKSNKFENLKAMPGSVVSLDIETATQLDIVAEFEIDKEAIEKTDQTNEEYNCKTSGGAAHRGALGPFGLLVLANDGLSEYTPIYFYVVKGNDGNLKTSFCSDQSRSSLATDVDKSVFGSFVPVLENEKLSLRILVDHSIVESFAQGGRTTVTSRVYPTRAIYGDAKLFLFNNATEATVTASLKVWQMNSAFIKPFSPEQRS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00288 646 CDD GH32_Fruct1-like 125 425 - -
Car08g00288 646 Gene3D Glycosyl hydrolase domain; family 43 123 448 IPR023296 -
Car08g00288 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 437 636 IPR013320 -
Car08g00288 646 Pfam Glycosyl hydrolases family 32 C terminal 440 631 IPR013189 -
Car08g00288 646 Pfam Beta-fructofuranosidase, N-terminal domain 14 111 IPR021792 GO:0004564
Car08g00288 646 Gene3D - 449 632 - -
Car08g00288 646 SMART glyco_32 119 592 IPR001362 GO:0004553|GO:0005975
Car08g00288 646 Pfam Glycosyl hydrolases family 32 N-terminal domain 119 437 IPR013148 -
Car08g00288 646 ProSitePatterns Glycosyl hydrolases family 32 active site. 119 132 IPR018053 GO:0004553|GO:0005975
Car08g00288 646 SUPERFAMILY Arabinanase/levansucrase/invertase 112 438 IPR023296 -
Car08g00288 646 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 32 640 - -
Car08g00288 646 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 32 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00288 Car-Chr8 2262720 2266073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00288 12 643 Glycoside Hydrolase AT1G12240 63.411 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00288 K01193 - gmx:100798772 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00288 08 2262720 2266073 Car08g00288 08 2262720 2266073 ECH
Car08g00288 08 2262720 2266073 Car07g01216 07 10976627 10981282 PCT