Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00233 ATGTCCATCATCATGAAAAAAAATCTCTCCATCTTCCTTTTCATCGCCATAAGCTCCATCGCGGCAGCACAAGCCGGCAAATTCAACATCACTAACAAATGCAACTACACCATATGGCCCGCCGCCGTTCCTGGCGGCGGCATAAGGCTTAACCCTGGAgaatcatggaacatgaacatgaccaatggtacaaggaacGCAAGAATATGGGGTCGAACCAATTGCACTTTCGACAATTTTGGTATTGGAAAGTGCCAAACGGGTGATTGTAACAATACTCTTGAATGTACAACTGTTGGTACACCACCAAACACAGTTGTAGAAATTTCTTTGAATATGTATAATGACCTCGATTTCTACGATATTTCGCTTGTAGAAGGTTTCAACATTCCAATTCAATTGACGCCGTCTATTAACGCTTGTGGAAGCGTTAATTGTAGCGCCAATATAAACGGAGAATGTCCTACTCAACTAAAAGTTATAGGTGGATGCCACAATCCTTGTACTAAGTTTAATACAACTGAATATTGTTGTACCTCTGGTTCTGCCACGTGTTCTCCAACTACTTATTCTAAGTTCTTCAAAGATAGGTGTCCTTATACATATAGTTACCCTAAAGATGATGCAACTAGCACATTCACTTGTATGGGGGGAACTAATTATGATATTGTCTTTTGTCCTTAA 684 0.3801 MSIIMKKNLSIFLFIAISSIAAAQAGKFNITNKCNYTIWPAAVPGGGIRLNPGESWNMNMTNGTRNARIWGRTNCTFDNFGIGKCQTGDCNNTLECTTVGTPPNTVVEISLNMYNDLDFYDISLVEGFNIPIQLTPSINACGSVNCSANINGECPTQLKVIGGCHNPCTKFNTTEYCCTSGSATCSPTTYSKFFKDRCPYTYSYPKDDATSTFTCMGGTNYDIVFCP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00233 227 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 5 227 - -
Car08g00233 227 PIRSF PR5 1 227 IPR001938 -
Car08g00233 227 Gene3D Thaumatin 26 227 IPR037176 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 118 134 IPR001938 -
Car08g00233 227 PRINTS Pathogenesis-related protein signature 217 226 IPR001938 -
Car08g00233 227 PANTHER OS03G0233200 PROTEIN 5 227 IPR001938 -
Car08g00233 227 SMART tha2 28 227 IPR001938 -
Car08g00233 227 ProSiteProfiles Thaumatin family profile. 25 227 IPR001938 -
Car08g00233 227 SUPERFAMILY Osmotin, thaumatin-like protein 27 227 IPR037176 -
Car08g00233 227 Pfam Thaumatin family 32 227 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00233 Car-Chr8 1855948 1856940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00233 11 227 Receptor kinase-like Gene Family AT5G38280 36.777 5.82e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00233 - - gmx:100037479 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00233 08 1855948 1856940 Car08g00233 08 1855948 1856940 ECH
Car08g00233 08 1855948 1856940 Car06g00552 06 5572056 5574924 PCT