Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00552 ATGACTGATGTTCACCCCTTCTATACAATGGTGACCGTCTTCGCAACCCATACACAAGCAGCAACATTTGACATCACAAATAAATGCCCCTACACCGTATGGGCCGCTGCCGTACCAGGCGGCGGTAAACAACTTACCAATGGCCAAACATGGACCATTAACGTAGCTGCAGGAACCACAGCGGCCCGTATTTGGGCCCGAACCGGATGTAATTTCGATGGTACGGGTCACGGTGGATGCCAAACCGGCGACTGTGGCGGTTTATTAAATTGCCAAGCGTACGGTACACCGCCCAACACATTAGCGGAATTCGCTTTAAACCAATTCAACAATTTAGATTTCATCGATATCTCTTTGGTGGATGGATTCAACGTTCCTATGGATTTTAGTCCAACATCTAATGGGTGTACACGTGGCATAAGATGTACGGCTGATATTAACGGACAGTGTCCTGCTCAACTTAAAACTCAAGGCGGTTGTAACAACCCTTGTACGGTTTTTAAAACCGATGAGTATTGTTGCAATTCTGGTAGCTGTGGGCCCACTGATTATTCAAGATATTTTAAGACTAGGTGCCCTGATGCTTATAGTTACCCAAAGGATGATCAGACAAGTACGTTCACTTGCCAAGGTGGAACCAATTACAGGGTTGTTTTTTGCCCATGA 666 0.4595 MTDVHPFYTMVTVFATHTQAATFDITNKCPYTVWAAAVPGGGKQLTNGQTWTINVAAGTTAARIWARTGCNFDGTGHGGCQTGDCGGLLNCQAYGTPPNTLAEFALNQFNNLDFIDISLVDGFNVPMDFSPTSNGCTRGIRCTADINGQCPAQLKTQGGCNNPCTVFKTDEYCCNSGSCGPTDYSRYFKTRCPDAYSYPKDDQTSTFTCQGGTNYRVVFCP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00552 221 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Car06g00552 221 PRINTS Pathogenesis-related protein signature 63 74 IPR001938 -
Car06g00552 221 PRINTS Pathogenesis-related protein signature 113 129 IPR001938 -
Car06g00552 221 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Car06g00552 221 PRINTS Pathogenesis-related protein signature 41 50 IPR001938 -
Car06g00552 221 PRINTS Pathogenesis-related protein signature 76 105 IPR001938 -
Car06g00552 221 PANTHER THAUMATIN-RELATED 9 221 - -
Car06g00552 221 SMART tha2 23 221 IPR001938 -
Car06g00552 221 Gene3D Thaumatin 21 221 IPR037176 -
Car06g00552 221 PIRSF PR5 2 221 IPR001938 -
Car06g00552 221 ProSitePatterns Thaumatin family signature. 76 91 IPR017949 -
Car06g00552 221 Pfam Thaumatin family 27 221 IPR001938 -
Car06g00552 221 ProSiteProfiles Thaumatin family profile. 20 221 IPR001938 -
Car06g00552 221 PANTHER OS03G0233200 PROTEIN 9 221 IPR001938 -
Car06g00552 221 SUPERFAMILY Osmotin, thaumatin-like protein 20 221 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00552 Car-Chr6 5572056 5574924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00552 7 221 Receptor kinase-like Gene Family AT5G38280 36.515 4.78e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00552 - - gmx:100301882 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00552 06 5572056 5574924 Car06g00552 06 5572056 5574924 ECH
Car08g00233 08 1855948 1856940 Car06g00552 06 5572056 5574924 PCT