Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00232 ATGCTTTCATTTCATCCAATATTCAATATCCAAATGAGTTTCTTATCAATCCTCACAATCACACTATGCTCCCTTCTCTTCCTCCTCACTCCCTCACAAGCAGCCAATTTTGAGATAGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGTCCGGGCGGTGGTCGTCGCCTTGACCGCGGTCAAACATGGAATCTTTGGGTTAACGCTGGCACTTCAATGGCTCGTATTTGgggtcgtactggttgcaatttcgatggcagcggtcgtggccgctgccaaacaggtgattgcactggtggacttcaatgcactggttggggtgtcccaccaaacacattggccgaatTTGCATTAAATCAATATGGTAATCTAGATTTCTACGACATTTCACTCGTTGATGGTTTCAACATCCCAATGGATTTCTTCCCTATTAACGGTGGATGTCACAAAATCAGTTGCACAGCCGATATTAACGGACAATGCCCTAACGAATTGAGGGCTCAAGGTGGTTGTAACAACCCTTGTACCGTTTATAAAACAAATGAATATTGTTGCACTAATGGGCAAGGAAGTTGTGGGCCAACTTATTTCTCAAGGTTTTTTAAAGATAGATGTCATGATGCTTATAGTTACCCTCAAGATGACCCAACTAGCACTTTCACTTGTCCAGCTGGCTCTAATTATAAGGTTGTTTTCTGTCCTCTTGGTGCTCCTCATATAGAGATGCCTTTAATTCAAACCAATGTGTATTGA 759 0.3518 MLSFHPIFNIQMSFLSILTITLCSLLFLLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNAGTSMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEFALNQYGNLDFYDISLVDGFNIPMDFFPINGGCHKISCTADINGQCPNELRAQGGCNNPCTVYKTNEYCCTNGQGSCGPTYFSRFFKDRCHDAYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLIQTNVY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00232 252 ProSiteProfiles Thaumatin family profile. 34 236 IPR001938 -
Car08g00232 252 Pfam Thaumatin family 41 236 IPR001938 -
Car08g00232 252 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
Car08g00232 252 Gene3D Thaumatin 34 237 IPR037176 -
Car08g00232 252 CDD TLP-P 37 236 - -
Car08g00232 252 SMART tha2 37 236 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 36 48 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Car08g00232 252 PRINTS Pathogenesis-related protein signature 226 235 IPR001938 -
Car08g00232 252 PIRSF PR5 4 249 IPR001938 -
Car08g00232 252 PANTHER OS03G0233200 PROTEIN 12 236 IPR001938 -
Car08g00232 252 SUPERFAMILY Osmotin, thaumatin-like protein 36 236 IPR037176 -
Car08g00232 252 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 12 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00232 Car-Chr8 1850605 1851740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00232 24 250 Receptor kinase-like Gene Family AT5G38280 35.271 1.17e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00232 - - gmx:100240704 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00232 08 1850605 1851740 Car08g00232 08 1850605 1851740 ECH
Car08g00232 08 1850605 1851740 Car06g00551 06 5569305 5570208 PCT