Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00551 ATGTCTCTCATAAAAATATGTTTGTCTATGTTGGCTTTTTGCTTGATATCAGCACAAGGAGCAAGGTTCGACATCGTAAACCAATGCTCCTACAATGTGTGGCCTGCCGCCATTCCAAGCGGTGGCGGTAGGCAGTTAAATCCACGCGAGACATGGGGATTGGACATCCCCGCCGGAACCCAATCCGCTCGAATTTGGGGCCGAACTGGCTGCAACTTCGACGGTTCAGGCCGCGGCAGTTGCCAAACTGGTGACTGCGGTGGTGACCTCAGTTGCCACTTATCCGGTCAACCACCAACCACACTTGCGGAATTTTCGCTTAATGGTGGAAATAATCAAGATTACTTTGATATATCTGTGATCGATGGTTTCAATATTCCAATGCAATTTAGTTCAACAACTAATAATTGCAACCGTGTACTAACTTGCAAGGATTCTTCATGCCCTGATGCTTATCATCAACCTAATGATGTTAAAACGGTTTCATGCCCCGGTGGAACTAATTATAGAATCGTCTTTTGCCCTTGA 528 0.4602 MSLIKICLSMLAFCLISAQGARFDIVNQCSYNVWPAAIPSGGGRQLNPRETWGLDIPAGTQSARIWGRTGCNFDGSGRGSCQTGDCGGDLSCHLSGQPPTTLAEFSLNGGNNQDYFDISVIDGFNIPMQFSSTTNNCNRVLTCKDSSCPDAYHQPNDVKTVSCPGGTNYRIVFCP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00551 175 Pfam Thaumatin family 27 141 IPR001938 -
Car06g00551 175 CDD TLP-P 23 175 - -
Car06g00551 175 PANTHER THAUMATIN-LIKE PROTEIN 10 175 - -
Car06g00551 175 SUPERFAMILY Osmotin, thaumatin-like protein 22 175 IPR037176 -
Car06g00551 175 SMART tha2 23 175 IPR001938 -
Car06g00551 175 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Car06g00551 175 PANTHER OS03G0233200 PROTEIN 10 175 IPR001938 -
Car06g00551 175 PIRSF PR5 1 147 IPR001938 -
Car06g00551 175 PIRSF PR5 141 175 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Car06g00551 175 PRINTS Pathogenesis-related protein signature 165 174 IPR001938 -
Car06g00551 175 ProSiteProfiles Thaumatin family profile. 20 175 IPR001938 -
Car06g00551 175 Gene3D Thaumatin 22 175 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00551 Car-Chr6 5569305 5570208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00551 23 148 Receptor kinase-like Gene Family AT5G38280 37.500 4.02e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00551 - - mtr:MTR_8g096910 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00551 06 5569305 5570208 Car06g00551 06 5569305 5570208 ECH
Car08g00232 08 1850605 1851740 Car06g00551 06 5569305 5570208 PCT