Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00180 ATGGCGCAAAACAGATTCATCGTTGAAGTCGAGAAAGCAAAGGAAGCTAGTGGCGATACACCGTCGAGAGGACCTGTCTATCGCAGTATCTTCGCTAAGGATGGATTTCCGCCTCCTGTTCAAGGTCTTGATAGCTGCTGGGATGTTTTCCGATTGTCTGTTGAGAAATATCCAAATAATCCTATGCTTGGTGCCCGAGAGATTGTGGATGGAAAGCATGGCAACTACAAGTGGCAAACCTACAAAGAAGTATATGACATTGTGTTGAAAGTTGGAAATTCTATCCGCAGCTGTGGTTATGGAGAAGGTATAAAGTGTGGTATTTATGGGACCAATTCTGCAGAGTGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTCTTTGTGTTCCTTTATATGATACCTTAGGTTCTGGGGCCATAGAGTTTATTATATGCCACGCAGAAGTCTCAATTACATTTGCAGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAATGCAACCAAATATCTCAAGACAATTGTGAGCTTCGGAAAGGTTACCGCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGACTGACAATATATTCATGGACTGAATTTTTACAAGTGGGTGAAAGTCAGAGTTTTGATCTACCTGTGAAGAAAAGGAGTGATATATGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTATTGATATCCAATGAGAGTATCATTACCCTCTTAGCTGGGGTTAAGCGGCTGTTGGAGAGTGTCAATGAAAATTTGACAGAGAAGGATGTGTACTTATCATACCTTCCTCTTGCCCATATCTTTGATAGGGTCATTGAGGAGACATTTATATGGCTTGGTGCCTCAATAGGTTTCTGGCGTGGGGATGTTAAATTGTTAATTGAAGACATTGGGGAGCTAAAACCAACCATTTTCTGTGCTGTACCCCGTGTACTTGATAGAGTGTACTCAGGTTTAACACAGAAGATTTCTTCCGGAGGCTTCCTTAAGAAGACGTTATTCAACTTTGCTTATTCATATAAGTCAAATAAGATGATGAAAGGGCATAACCATGAGGCAGCATCTCCACTTTTTGACAGAATTGTGTTTGATAAGGTAAAGCAAGGTTTAGGGGGTAAAGTGCGTCTTATTTTGTCTGGAGCAGCACCCCTATCTGTGCATGTGGAAAGTTACTTACGGGTGGTGACCTGTGCTCATGTCCTACAAGGATATGGTTTGACCGAAACCTGTGCCGGAACCTTTGTCTCATTACCAAATCAACATGGAATGCTTGGAACAGTGGGTCCTCCTGTCCCAAATGTGGATGCGTGTCTGGAATCTGTTCCTGAAATGGGTTACGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTAAAGGGAGATACCTTGTTTTCGGGGTACTACAAACGTGAAGACCTCACGAAAGAGGTTCTGATTGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAGATTATTGACCGGAAGAAAAACATATTCAAGCTTTCACAAGGAGAATATGTTGCCGTTGAAAACCTGGAGAATATTTTCGGCCAAGTTCCTTCTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGAAAGCAGGCACTTGAACATTGGGCAGAGCAAAATGGTATATCAATGGACTTCAATTCTCTGTGTGAAGATTCTAGGGCAAAAGGTTACATACTTGAAGAGCTCTCGAAGATTGGAAAGGAAAAGAAGTTGAAAGGCTTCGAGTTTATAAAAGCAGTTCATCTTGACCCAGTTCCATTTGATATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAGTTGCTTAAACACTATCAGAGTGTGATCGATAACATGTACAAAAGTGGAAGTAAACCCCGTGCCTGA 1989 0.4193 MAQNRFIVEVEKAKEASGDTPSRGPVYRSIFAKDGFPPPVQGLDSCWDVFRLSVEKYPNNPMLGAREIVDGKHGNYKWQTYKEVYDIVLKVGNSIRSCGYGEGIKCGIYGTNSAEWIMSMEACNAHGLLCVPLYDTLGSGAIEFIICHAEVSITFAEEKKIPELLKTFPNATKYLKTIVSFGKVTAEQKQEVEKFGLTIYSWTEFLQVGESQSFDLPVKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNENLTEKDVYLSYLPLAHIFDRVIEETFIWLGASIGFWRGDVKLLIEDIGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKSNKMMKGHNHEAASPLFDRIVFDKVKQGLGGKVRLILSGAAPLSVHVESYLRVVTCAHVLQGYGLTETCAGTFVSLPNQHGMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDTLFSGYYKREDLTKEVLIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIFGQVPSIESIWVYGNSFEAFLVAVVNPRKQALEHWAEQNGISMDFNSLCEDSRAKGYILEELSKIGKEKKLKGFEFIKAVHLDPVPFDMERDLITPTYKKKRPQLLKHYQSVIDNMYKSGSKPRA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00180 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Car08g00180 662 Gene3D - 43 516 IPR042099 -
Car08g00180 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 657 - -
Car08g00180 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
Car08g00180 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Car08g00180 662 Pfam AMP-binding enzyme 53 524 IPR000873 -
Car08g00180 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 4-LIKE 5 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00180 Car-Chr8 1400168 1410607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00180 3 656 Acyl Lipid Metabolism Gene Families AT4G23850 75.076 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00180 K01897 - gmx:100814965 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00180 08 1400168 1410607 Car08g00180 08 1400168 1410607 ECH
Car08g00180 08 1400168 1410607 Car06g00450 06 4567192 4578550 PCT