Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00176 ATGGCATCGCGCGTCAGCATCAGTAATACCAACGCTTTCCCTTCTTCTTCACCGTCCTATTTAAACTCCTCTCGTTTTCTCTCTCACGCTAATAACGTTTCATTCCAAACTCAAAACGGTTCTACCATGCTTAACAAAACTGTTCTCGTTACCGGTGGAGCCGGTTACATCGGTAGCCACACCGTTCTTCAGCTTTTGCTCGGTGGTTTCAAAACCGTCGTTGTTGATAACCTTGATAATTCATCCGAAGTTGCTATTCACAGAGTCAAGGAACTCGCCGCAGAATTTGGGAATAACCTTAACTTTCATAAGGTAGACCTCCGTGACAGGGCTGCACTAGAGCAAATTTTTGCTTCTACAAAGTTTGATGCAGTCATACATTTTGCTGGAATGAAAGCAGTAGGTGAAAGTGTGCAGAAACCGTTACTCTACTACAACAACAATTTGATTGGGACAATCACTTTATTAGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTTCCTCTGTCAGCAATGAACCCATATGGACGAACCAAGCTCACCATTGAAGAAATTTGTCGTGATGTCCATCGTTCTGAGCCAGATTGGAAAATAATGTTATTGAGATACTTCAACCCAGTGGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCGTTTATTCAGCAAGTTGCGGTTGGCAGACGGCCTGCACTGACAGTATATGGAAATGATTATAATACAATTGATGGCACCGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCCGCATTGCTTAAACTAGAAGAAGCTGATATAGGTTGTGACGTTTGTAACTTGGGGACAGGAAAGGGAACATCAGTTCTGGAGATGGTTAGAGCTTTTGAAGAGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGACCGTAGACCTGGTGATGCCGAAATTGTTTATGCCTCAACAAAAAAAGCTGAAAAAGAACTTAACTGGAAGGCAAAATATGGAATTGATGAAATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAATCCTTACGGCTATGGATCTCAGGATTCCACAGATTAA 1176 0.4311 MASRVSISNTNAFPSSSPSYLNSSRFLSHANNVSFQTQNGSTMLNKTVLVTGGAGYIGSHTVLQLLLGGFKTVVVDNLDNSSEVAIHRVKELAAEFGNNLNFHKVDLRDRAALEQIFASTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLTIEEICRDVHRSEPDWKIMLLRYFNPVGAHPSGYIGEDPRGIPNNLMPFIQQVAVGRRPALTVYGNDYNTIDGTGVRDYIHVVDLADGHIAALLKLEEADIGCDVCNLGTGKGTSVLEMVRAFEEASGKKIPLVMADRRPGDAEIVYASTKKAEKELNWKAKYGIDEMCRDQWNWASKNPYGYGSQDSTD 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00176 391 Gene3D - 48 317 - -
Car08g00176 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 383 IPR036291 -
Car08g00176 391 Gene3D - 236 377 - -
Car08g00176 391 CDD UDP_G4E_1_SDR_e 47 376 IPR005886 GO:0003978|GO:0006012
Car08g00176 391 TIGRFAM galE: UDP-glucose 4-epimerase GalE 48 382 IPR005886 GO:0003978|GO:0006012
Car08g00176 391 Pfam GDP-mannose 4,6 dehydratase 49 372 IPR016040 -
Car08g00176 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 43 388 - -
Car08g00176 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 43 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00176 Car-Chr8 1364310 1368360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00176 47 361 Miscellaneous Gene Families AT4G00110 26.647 8.28e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00176 K01784 - gmx:100818509 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00176 08 1364310 1368360 Car08g00176 08 1364310 1368360 ECH
Car08g00176 08 1364310 1368360 Car06g00439 06 4495793 4501383 PCT