Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00171 ATGTCGGTTGTTGATGTTGCTCAGACTCCGATTTTCAAACAATCGGAAAATTCACATTTTAATTGGCAAGAACGAATTAAACGTTGCTCCGGTGAATCGATTCTAATATATCTAACTGTCGACGGAGCCGTTACACCGATGCGTGTTTTAGAATCCGATTCAATTGCTTCAGTGAAAATGAGGATTCAAACGCGAAATGGTGTTTCTGAGAAGAAGCAGAAGCTAGTTTCAAATGGAAGAGAGCTAGCACGAAATAGCACGCTTGTCAAAGATTACGGTGTAACCGCCGGCAATGTTGTTCATTTGGTTCTTCGTCTCTCTGACATGATTTTCATTGTCGTGAGAACAACCTGCGGGAAGGAATTTGAGTTTCAGATTGATCGGCATAGGAACGTGGCGCATCTTAAACAGTGTATTAAAAAGAAAGGGAAAGGTTTCATTGATCTTGTGGAAGAGGAACCGGAGTTTTTTTGCCGCGGCGAAAAGCTTGATGATCAGAGAATTTTTCATGATATTTGTAAAAATGATGATGATGATGTTATTCATCTCATTGTTCAAAAATCAGCACAAGTTAATGCTACATTGGTTCACGATAAGGATTTGGAACTTTCTGTTGTTGCAGATACAACAGAGAATAAAAATCAGAATCAGAAACAGAATGTAGTTAATATTATAGAACAACCTTGTGATGTTAATTTCTGTTTAGAGCCAGTTTTTGTGAACCCTAAGATCAATTTGTTTCCTTTCCTATGGGATATGATTGATTCAACTTTCAATGGTTTGAAAAATGGAAATAAACCTGTAAGATCTTCTGAGGGAACAGGTGGGGCTTACTTCATGCAAGATTCTAAAGGTGTTGAGTATGTTTCTGTTTTCAAGCCTATTGATGAGGAACCAATGGCTGTTAATAATCCACATGGATTGCCGGTTTCATTGGACGGTGAGGGTTTAAAGAGAGGGACAAAGGTCGGAGAAGGAGCTGTGAGAGAAGTTGCAGCCTATATATTGGATCATCCAAAGGCTGGACCACGGTTGGTGTCTGGTGAAGCCATTGGTTTTTCCGGTGTTCAGCCTACTGTTATGGTTCGGTGTTTTCATGAAGCGTTTAATTACCCGGATGACGGGTATTGTGGCTCTTTGGAGATGGATCAGAAGGTAGGGTCTTTGCAGATGTTTATGAATAACAATGGTAATTGTGAGGATATTGGACCTGGAGCTTTTCCCGTGGAAGAGGTGCATAAGATCAGTGTGCTTGATATAAGAATGGCTAATGCAGATAGGCATGCAGGTAATATATTGTTTAGAAAAGAGCCAAGTGGGAGGACTGTGCTTATTCCTATTGATCATGGATATTGTCTTCCTGAGAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCACGTCAGCCATACTCTCCCGATACAGTTGATTATATAAACTCTCTGGATGCTGAAAAGGACATAGAGCTTCTAAAATATTATGGTTGGAATGTTCCAGTTGAGTGTGCCAGAACACTCCGCATCTCCACAATGCTATTGAAGAAAGGGGTTGAGAGAGCTCAGGAATTATCGCTACCTGGCATGGAGGAATCTGTTTTTCTTGAATTTGTATCACAGATCATGGATTCCCGCCTCGGTGAGCTTTTGAAATAG 1662 0.4043 MSVVDVAQTPIFKQSENSHFNWQERIKRCSGESILIYLTVDGAVTPMRVLESDSIASVKMRIQTRNGVSEKKQKLVSNGRELARNSTLVKDYGVTAGNVVHLVLRLSDMIFIVVRTTCGKEFEFQIDRHRNVAHLKQCIKKKGKGFIDLVEEEPEFFCRGEKLDDQRIFHDICKNDDDDVIHLIVQKSAQVNATLVHDKDLELSVVADTTENKNQNQKQNVVNIIEQPCDVNFCLEPVFVNPKINLFPFLWDMIDSTFNGLKNGNKPVRSSEGTGGAYFMQDSKGVEYVSVFKPIDEEPMAVNNPHGLPVSLDGEGLKRGTKVGEGAVREVAAYILDHPKAGPRLVSGEAIGFSGVQPTVMVRCFHEAFNYPDDGYCGSLEMDQKVGSLQMFMNNNGNCEDIGPGAFPVEEVHKISVLDIRMANADRHAGNILFRKEPSGRTVLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYINSLDAEKDIELLKYYGWNVPVECARTLRISTMLLKKGVERAQELSLPGMEESVFLEFVSQIMDSRLGELLK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00171 553 SUPERFAMILY Ubiquitin-like 106 186 IPR029071 -
Car08g00171 553 SUPERFAMILY Ubiquitin-like 38 107 IPR029071 -
Car08g00171 553 CDD Ubl_ubiquitin_like 112 184 - -
Car08g00171 553 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 264 553 IPR000403 -
Car08g00171 553 SMART ubq_7 110 186 IPR000626 GO:0005515
Car08g00171 553 SMART ubq_7 34 105 IPR000626 GO:0005515
Car08g00171 553 Coils Coil 207 227 - -
Car08g00171 553 Gene3D - 11 108 - -
Car08g00171 553 Pfam Phosphatidylinositol 3- and 4-kinase 273 523 IPR000403 -
Car08g00171 553 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 522 IPR044571 -
Car08g00171 553 Pfam Ubiquitin family 40 106 IPR000626 GO:0005515
Car08g00171 553 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 522 - -
Car08g00171 553 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 523 552 - -
Car08g00171 553 SUPERFAMILY Protein kinase-like (PK-like) 416 489 IPR011009 -
Car08g00171 553 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Car08g00171 553 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 523 552 IPR044571 -
Car08g00171 553 Gene3D - 109 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00171 Car-Chr8 1332408 1334730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00171 1 523 Acyl Lipid Metabolism Gene Families AT5G24240 54.839 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00171 - - lja:Lj0g3v0201989.1 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00171 08 1332408 1334730 Car08g00171 08 1332408 1334730 ECH
Car08g00171 08 1332408 1334730 Car06g00434 06 4464496 4466451 PCT