Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00117 ATGAATTCAAGATCATTAAGGTCAAGCAAGTCATCTATATCAACATTTTCTGATGCATCCGAACACCAGATGCATCGTTTACCTCAGACTAATAGAGTGACATTTAGAAGGAGTTCCTCAGGTCGCTATATCAATTATTCTAGAGACGATCTCGACAGTTTGCTAGGGAGTAGTGAGTCTATTGACTTTGAAAGTGTGAATATCCGTGAGCTAACTTTGGATCCATTGATCTCAAAGAAAGTTGAAGAGCATTATGTGTCAAATTCGCTCTTCACAGGTGGATTCAACAGTAACACTCGAGCTGTTCTAATGGATAAGGTGATAGAATCTAAAGCAAACCATCCACAGATGGCTGGTGCAAAAGGATCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGAGGTGCTGATATTCTTCCATGTGAGTGTGATTTTAAGATATGCAGAGATTGTTATAAAGATGCGGTAAAAGTTGGAGGTGGAATATGCCCGGGATGCAAGGAGTCGTATAAAAACACAGAACTAGATGAAGCGGCTGTCGATAACGAACTCCCCCTTCTGAGTCCTCCGCCGATTGGAATGTCTAAAATGGAGAAGAGGTTGTCGATGATGAAGTCATCAAAGTCGGGACTAATAAGGAGCCAAACCGGAGATTTTGATCACAATAGATTTCTTTTTGAAACAAAGGGAACCTATGGCTATGGCAATGCTATATGGCCAAAGGAAGGAGATGATATTACCTCTGGGCGTAATGAATTGATGAACAAACCATGGAGACCACTTACACGGAAACTGAAAATACCAGCTGCTATTCTGAGCCCGTATCGTCTCATCATTTTTGTTCGTATGGTTGTATTGGCACTTTTCCTGACTTGGAGGATCAAACATCAAAATACCGACGCAATATGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCTTTTTCTTGGTTGTTGGATCAGCTACCTAAACTATGTCCGGTAAATCGTTCTACTGATCTTAAAGTTCTGCAAGAGAAATTTGAAACACCGACGCCTAACAATCCTACCGGGAAGTCTGATCTTCCGGGCATAGATATCTTTGTCTCGACTGCTGATCCCGAGAAAGAACCACCTCTTGTCACTGCCAACACAATATTGTCTATCTTAGCTGCTGATTATCCCGTCGAGAAGCTCTCGTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACTTTTGAAGCAATGGCTGAAGCTGCTAGTTTTGCTAATGTATGGGTTCCCTTTTGCCGCAAACATGATATCGACCTCAGAAATCCCGAGTCGTACTTCAACTTAAAACAAGACCCTTACAGAAACAAAGTGCGGCCGGATTTTGTCAGGGATCGTAGACGGGTGAAGCGTGAGTATGATGAATTCAAGGTTAGGATCAACAGTTTGCCTGACTCTATTCGTCGCAGGTCAGATGCCTTTCAATCAAGAGAAGAAACCAAGGCCATGACGGTTCAGAGACAAAACAATGAAGATGAATCTTCAGACATCGCAAAGCTTCCAAAAGCAACGTGGATGGCTGACGGTACTCATTGGCCAGGGACTTGGTTGAATCCTACATCTGACCACTCCAGGGGTGACCACGCAGGTATCATTCAGGTGATGTTGAAACCTCCGAGCGAGGAACCTCTTATTGGAAAAGCCAAAGATGATGCAACGCTCATTGACTCGACTGATATCGACATCCGTCTTCCTCTTCTGGTTTATGTCTCTCGAGAGAAGCGTCCAGGCTATGATCACAACAAAAAAGCAGGAGCCATGAATGCCTTAGTTCGAGCCTCGGCTGTAATGTCTAATGGTGCATTTATTCTCAATCTTGATTGTGACCACTATATCTACAACACAAAAGCAATGAGAGAAGGCATGTGCTTTATGATGGACCGTGGAGGTGACCGTATTTGTTACGTCCAGTTCCCCCAAAGGTTCGAGGGGATTGATCCTTCTGATAGATATGCTAATCATAATACTGTTTTCTTTGACATCAATATGCGAGCCCTCGATGGACTTCAAGGGCCGGTATATGTGGGAACTGGGTGCCTTTTCAGACGGATTGCACTTTATGGTTTCGATCCACCCCGGTCTAAAGAGCACCATCCAGGTTTCTGTTCTTGTTGCTTTGGCCGGAAGAAGAAGGTGTCAATGTCTAGCATCCCCGAAGAGAATCATGCGCTACGGATGGGTGATTCAGAAGATGATGAAGAAATAGCTCTATATTTGACTCCAAAGCAGTTCGGAAACTCAAATTTCCTCATTGAATCTATCCCAGTGGCAGAGTTCCAAGGCCGGCCACTAGCCGATCACCCTTCTGTGAAAAACGGACGCCCGCCGGGTGCTCTCACCCTACCACGTGACCTTCTTGATGCATCAACCGTAGCAGAGGCTGTCAGTGTCATCTCGTGTTGGTTCGAGGACAAGACTGAATGGGGACAACGTGTTGGATGGATCTATGGATCAATTACCGAGGATGTGGTCACCGGATACAGAATGCACAATAGGGGATGGAAATCAGTTTACTGTGTGACCAAGCGTGACGCTTTCCGTGGAACCGCTCCCATCAATCTCACAGACAGGCTGCATCAGGTCCTTAGATGGGCTACTGGTTCGGTCGAAATCTTCTTGTCTAGGAACAACGCCCTTTTCGCTAGCCCGAGAATGAAACTTCTTCAAAGATTAGCATACCTTAATGTTGGAATTTATCCATTCACATCCTTTTTTCTAATAGTCTATTGCTTCCTTCCTGCACTATCCCTATTCTCTGGCCAATTCATTGTTCAAACACTCAATGTAACATTCCTTTCATATCTCCTCGGCATCACCGTGACATTGTGCATGCTTGCCGTGCTCGAGATAAAGTGGTCAGGCATTGAGCTTGAAGAATGGTGGAGAAATGAACAATTTTGGTTAATTGGAGGGACAAGTGCACATCTAGCTGCTGTGTTTCAAGGTTTGCTCAAAGTCATAGGAGGGATCAACACTTCATTCACATTGACTACAAAATCCGGAGGCGATGACATAGACGACGAGTTTGCTGATCTCTATATCGTCAAATGGACGTCCCTTATGATACCGCCGATCACAATTATGATGGTTAACTTGATAGCTATAGCAGTTGGAATTAGCCGGACGATATACAGTGTTATACCGCAATGGAGCCGATTACTCGGCGGCGTTTTCTTTAGTTTTTGGGTTTTGGCTCATCTTTACCCTTTTGCCAAAGGTTTGATGGGAAGAAGAGGAAGGACACCAACCATTGTTTATATATGGTCAGGACTCATAGCAATCACTATATCTTTACTTTGGGTGGCAATTAATCCTCCTGCTGGAACTAACCAAATTGGAGGTTCATTCCAATTCCCATGA 3411 0.4427 MNSRSLRSSKSSISTFSDASEHQMHRLPQTNRVTFRRSSSGRYINYSRDDLDSLLGSSESIDFESVNIRELTLDPLISKKVEEHYVSNSLFTGGFNSNTRAVLMDKVIESKANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYKDAVKVGGGICPGCKESYKNTELDEAAVDNELPLLSPPPIGMSKMEKRLSMMKSSKSGLIRSQTGDFDHNRFLFETKGTYGYGNAIWPKEGDDITSGRNELMNKPWRPLTRKLKIPAAILSPYRLIIFVRMVVLALFLTWRIKHQNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLKVLQEKFETPTPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIDLRNPESYFNLKQDPYRNKVRPDFVRDRRRVKREYDEFKVRINSLPDSIRRRSDAFQSREETKAMTVQRQNNEDESSDIAKLPKATWMADGTHWPGTWLNPTSDHSRGDHAGIIQVMLKPPSEEPLIGKAKDDATLIDSTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGAFILNLDCDHYIYNTKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDINMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHPGFCSCCFGRKKKVSMSSIPEENHALRMGDSEDDEEIALYLTPKQFGNSNFLIESIPVAEFQGRPLADHPSVKNGRPPGALTLPRDLLDASTVAEAVSVISCWFEDKTEWGQRVGWIYGSITEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFLSRNNALFASPRMKLLQRLAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVFQGLLKVIGGINTSFTLTTKSGGDDIDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGISRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYIWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00117 1136 SUPERFAMILY RING/U-box 110 179 - -
Car08g00117 1136 MobiDBLite consensus disorder prediction 1 31 - -
Car08g00117 1136 Pfam RING/Ubox like zinc-binding domain 127 176 - -
Car08g00117 1136 Pfam Cellulose synthase 365 1127 IPR005150 GO:0016020|GO:0016760|GO:0030244
Car08g00117 1136 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 63 1134 - -
Car08g00117 1136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 189 IPR013083 -
Car08g00117 1136 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 63 1134 - -
Car08g00117 1136 MobiDBLite consensus disorder prediction 487 513 - -
Car08g00117 1136 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 573 707 IPR029044 -
Car08g00117 1136 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 930 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00117 Car-Chr8 904674 909690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00117 8 1136 Glycosyltransferase AT3G03050 80.087 0.0 1927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00117 K20924 - gmx:100792604 1999.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00117 08 904674 909690 Car06g02050 06 20440091 20445757 ECH
Car08g00117 08 904674 909690 Car08g00117 08 904674 909690 ECH