Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02050 ATGGCATCAAAATCATTCAAGGCAACCAGATCATCTCTGTCAGCAACTTCTGATGCGTCTGAAGCTCAGAAGCCTCCTTTACCTCCAACTGTAACATTTGCCCGAAGAACTTCCTCGGGTCGATACAGCAGTTACTCCAGAGATGATCTTGACAGTGAGCTAGGAAGTAATGACTTCGTGAATTATACGGTGCATTTACCACCAACTCCTGATAACCAACCCATGGATTCAACAATCTCACAGAAAGTTGAGGAGCAGTATGTGTCTAGCTCGCTATTCACTGGAGGATTCAACAGCATTACTCGAGCACATCTAATGGATAAGGTGATAGAATCTGAAACAAACCATCCCCAGATGGCTGGTGCAAAAGGGTCTTCATGTGCAATTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGAGGATATTCTTCCTTGTGAGTGTGACTATAAGATATGTAGAGATTGCTATGTAGATGCAGTGAAAACAGGAGATGGAATGTGCCCGGGATGCAAAGAGCCATATAAGAACACAGAACTCGATGAAGGGGCTGTCGATAATGGACGGCCACTTCCACTTCCTCCCCCAAATGGGATGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAATCAACAAAGTCGGCACTGATGAGAAGTCAAACCGGTGATTTTGATCACAATCGGTGGCTCTTCGAAACAAAGGGTACCTATGGTTATGGCAATGCTATATGGCCAAAGGAAGGGAATTTTGGAAATGGAAAAGATGACGATGTTGTTGAGCCAACTGAATTGATGAACAGACCGTGGAGGCCACTTACACGGAAACTGAAGATACCTGCTGCTATTCTCAGCCCATATCGTCTCATCATTTTTATTCGTATGATTGCTCTCGTACTATTCCTAGAATGGAGGGTCAGACACAAGAATACCGATGCAATTTGGTTATGGGGAATGTCTGTTGTTTGTGAAATATGGTTTGCTTTCTCTTGGCTTCTTGATCAGTTACCCAAGTTATGTCCAATAAACCGGTCCACCGATCTTAATGTTCTGAAGGAAAAGTTTGAAACACCGAGTCCCGACAATCCTACTGGAAAGTCTGATCTGCCAGGCATAGATGTATTTGTCTCAACTGCTGATCCAGAGAAAGAACCACCCCTTGTCACAGCAAACACCATCCTGTCTATTTTAGCTGCTGATTATCCAGTTGAAAAGCTTTCTTGCTATGTTTCTGATGATGGGGGTGCACTTTTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAACGTGTGGATTCCATTTTGCCGTAAACATGATATAGAGCCTAGGAATCCTGAATCATACTTCAACTTAAAGAGAGATCCTTATAAAAACAAAGTGAAACCTGATTTTGTGAAGGACCGTAGAAGAGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATTAATGGTTTGCCTGAATCTATCCGTCGTAGATCAGATGCTTTTCATGCAAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAAAATAGGGAAGATGAACCTACAGAACCCGTTAAGATTTCGAAAGCAACATGGATGGCTGATGGATCTCATTGGCCAGGGACTTGGTTGAACTCTTCACCTGAGCACTCAAAGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAACCTCCAAGTGATGAACCACTTCTTGGAAGTGCAGATGATACTAAGCTTATTGACATGACTGATATTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGTTATGATCACAACAAAAAAGCTGGGGCCATGAATGCATTAGTTAGAGCTTCAGCCATCATGTCCAATGGTCCTTTTATACTCAATCTTGACTGTGACCACTATATCTACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGCGGTGGTGACCGTCTCTGCTATGTCCAGTTCCCTCAAAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCTAATCACAACACTGTCTTTTTTGATGTTAACATGAGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTAGGAACTGGCTGTCTTTTTAGAAGGGTCGCCCTTTATGGTTTTGACCCTCCACGATCCAAAGAACACCACGCACCTTGCTGTAGTTGTTGCTTTGGGCGTAACAAGAAGAAGCATTCCAACACCTCAGAAGAGAACCGGGCACTAAAGATGGGTGACTCTGACGATGAAGAGATGAACCTTTCATTCTTTCCTAAGAAATTTGGAAACTCAAGTTTCCTTATTGACTCGATCCCAGTGGCAGAGTTCCAAGGTAGGCCACTTGCTGATCACCCCGCTGTGAAAAATGGACGCCGTCCTGGTGCTCTCACCATACCACGTGAGCTTCTTGATGCATCGACTGTTGCAGAAGCCATCAGTGTGATCTCATGTTGGTATGAGGACAAGACTGAGTGGGGACAACGTGTTGGATGGATCTACGGATCAGTTACTGAAGATGTGGTCACTGGTTATAGGATGCATAATAGAGGATGGAAATCGGTTTACTGTGTGACGAAACGTGATGCCTTCCGTGGAACTGCTCCCATCAATCTCACCGATAGGCTGCATCAGGTTCTTAGATGGGCTACTGGTTCAGTTGAGATATTCTTCTCAAGAAATAATGCAATTCTAGCCAGCCCAAAAATGAAAATTCTTCAAAGGATCGCATACCTTAATGTTGGAATTTATCCGTTCACTTCATTTTTCCTTATCGTCTACTGCTTCCTTCCCGCACTCTCCCTCTTTTCCGGACAGTTCATCGTTCAAACACTGAGTGTCACTTTTCTTGCTTATCTTTTGGCCATTAGTGTGACGCTGTGCATTCTCGCTGTGCTTGAGATTAAGTGGTCAGGAATTGAGCTAGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATCGGAGGTACAAGTGCTCATCTAGCTGCTGTCCTACAAGGTTTACTCAAAGTCGTAGCAGGTATTGAAATTTCATTTACATTGACTTCAAAATCCGGTGGTGATGACGTGGACGACGAGTTTGCTGATCTTTATGTTGTTAAATGGTCATCCCTTATGATACCGCCAATCACAATTATGATGGTTAACATAATAGCAATAGCTGTTGGAGTTAGCAGAACTATTTACAGTACAATACCGCAGTGGAGCCGTTTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTGTTGAGTCATCTATACCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAAGACACCTACCATTGTTTTTGTATGGTCAGGTCTAATAGCAATCATAATATCACTCCTTTGGGTGGCTATCAATCCACCAGCTGGTACCGACCAAATAGGTGGTTCATTCCAGTTTCCATGA 3426 0.4355 MASKSFKATRSSLSATSDASEAQKPPLPPTVTFARRTSSGRYSSYSRDDLDSELGSNDFVNYTVHLPPTPDNQPMDSTISQKVEEQYVSSSLFTGGFNSITRAHLMDKVIESETNHPQMAGAKGSSCAIPGCDSKVMSDERGEDILPCECDYKICRDCYVDAVKTGDGMCPGCKEPYKNTELDEGAVDNGRPLPLPPPNGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGNFGNGKDDDVVEPTELMNRPWRPLTRKLKIPAAILSPYRLIIFIRMIALVLFLEWRVRHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFETPSPDNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWIPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAFHAREEIKAMKLQRQNREDEPTEPVKISKATWMADGSHWPGTWLNSSPEHSKGDHAGIIQVMLKPPSDEPLLGSADDTKLIDMTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHAPCCSCCFGRNKKKHSNTSEENRALKMGDSDDEEMNLSFFPKKFGNSSFLIDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAILASPKMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLSVTFLAYLLAISVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYVVKWSSLMIPPITIMMVNIIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLSHLYPFAKGLMGRRGKTPTIVFVWSGLIAIIISLLWVAINPPAGTDQIGGSFQFP 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02050 1141 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 34 1139 - -
Car06g02050 1141 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 34 1139 - -
Car06g02050 1141 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 577 714 IPR029044 -
Car06g02050 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Car06g02050 1141 SUPERFAMILY RING/U-box 111 181 - -
Car06g02050 1141 Pfam Cellulose synthase 373 1131 IPR005150 GO:0016020|GO:0016760|GO:0030244
Car06g02050 1141 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Car06g02050 1141 MobiDBLite consensus disorder prediction 1 23 - -
Car06g02050 1141 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02050 Car-Chr6 20440091 20445757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02050 1 1141 Glycosyltransferase AT3G03050 83.899 0.0 2028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02050 K20924 - gmx:100792604 2159.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00117 08 904674 909690 Car06g02050 06 20440091 20445757 ECH
Car06g02050 06 20440091 20445757 Car06g02050 06 20440091 20445757 ECH