Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03152 ATGCTTTCGTTTTCGATCTCTCGTTTCCCTTCAACCCAATCATTTCCAATAAATCCAACTTTTCCCATTTACCCACACCAATTCAATCCACAAATTCGCGCTTCTTCTCCAAACAATAACAACAATAAAGCTGAAAACTTTCCAACACAAAAACCTACTTCAAGAGCAACCCCAGTTGAGAATAGCAACGATGGGGTTCTGTTTGGAAAAAATAAGAAAAAGGGGAAAGAAAAAGTCTACTGGGTTTGTAGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGTGTGTGTAGATCGTGTAGTGTTTCTGGTACTATGAAAGAGTTTCGTGAAGCCAAATCTAGTGATAGTAATGCTAAGGTTACTGGCTTTTCGATTATGGAAGATGGTTTGGGGTCTTGGCTACCTCAACACAATGCTGACTTGCGTCCTTTGAGATTGTCTGAGGTTAATCGAGGACTTGATCATTTGCATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAAATGAAGTTTCCAGAGTTCTTGGTGGTGGTCTTGTACCAGGCTCGCTGACTTTAGTCGGCGGCGATCCTGGTGTTGGGAAGAGTACCTTGTTATTGCAGATTGCTTCACTAATTGCAGAAGGGCACAAAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGTGTTGAGCAAATCGGTAACAGAGCAGACCGCCTAACAATTGGATCAGATATTTATTTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCAGTATCTCTCGCCTCGGGCTCTAGTTGTTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATACAGGTGAAAGAATGTACTTCGGCTTTACTGCGATTTGCAAAGACAACAAACATCCCAGTTCTATTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGAGAGAAGTACACTTCCCATCGAATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACGGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTGAGGCTGTTTCAAATGCCAGTGAAATGTTTCTAAGTGAGCAAGACCTCGATTCAGATATTTTAGCTGGACTAGCCGTTGCTGTAATAATGGATGGGTCCAGAACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGATCAAGGCAATTTAATGGTATCCAAGCAAATAGAGCCGATATGATCATATCCGTTCTTATAAAGCAAGCAGGTCTGCGTCTCCAAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGTCCGAGACTGCTGGAGATCTTGCAATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAGCTCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGTCTAGGTGGCGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTACACACAGTGGCGAAATTGGGTTATAGAATGTGTATAGTACCAAAGGCAGCTGAAAAAGCTTTGGGAAGTGAAGGTTTAGAAAAGATCAGAGTTGTTGGTTGCAGAAATCTGAAAGAGGTTATCAACACTATATTTCCCAATGTGACAAGAAGAAACAAGTGA 1689 0.415 MLSFSISRFPSTQSFPINPTFPIYPHQFNPQIRASSPNNNNNKAENFPTQKPTSRATPVENSNDGVLFGKNKKKGKEKVYWVCSNCGYSAGQWWGVCRSCSVSGTMKEFREAKSSDSNAKVTGFSIMEDGLGSWLPQHNADLRPLRLSEVNRGLDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIASLIAEGHKDGEASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSNDIEDILKKVQYLSPRALVVDSVQTVYLKGIMGSPGGIIQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLEAVSNASEMFLSEQDLDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLSETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVHTVAKLGYRMCIVPKAAEKALGSEGLEKIRVVGCRNLKEVINTIFPNVTRRNK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03152 562 Pfam Subunit ChlI of Mg-chelatase 435 525 - -
Car07g03152 562 Gene3D - 389 562 IPR014721 -
Car07g03152 562 Pfam AAA domain 174 317 - -
Car07g03152 562 ProSiteProfiles RecA family profile 1. 160 313 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Car07g03152 562 MobiDBLite consensus disorder prediction 29 61 - -
Car07g03152 562 Pfam Rubredoxin metal binding domain 81 108 IPR041166 -
Car07g03152 562 PANTHER DNA REPAIR-LIKE PROTEINRADA 42 555 - -
Car07g03152 562 PANTHER DNA REPAIR PROTEIN RADA 42 555 - -
Car07g03152 562 SMART AAA_5 181 339 IPR003593 -
Car07g03152 562 Gene3D - 169 377 IPR027417 -
Car07g03152 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 364 IPR027417 -
Car07g03152 562 MobiDBLite consensus disorder prediction 28 68 - -
Car07g03152 562 TIGRFAM sms: DNA repair protein RadA 76 540 IPR004504 GO:0003684|GO:0005524|GO:0006281
Car07g03152 562 PRINTS DNA repair protein radA signature 83 107 - -
Car07g03152 562 PRINTS DNA repair protein radA signature 173 201 - -
Car07g03152 562 PRINTS DNA repair protein radA signature 269 293 - -
Car07g03152 562 PRINTS DNA repair protein radA signature 308 336 - -
Car07g03152 562 PRINTS DNA repair protein radA signature 343 369 - -
Car07g03152 562 PRINTS DNA repair protein radA signature 418 441 - -
Car07g03152 562 SUPERFAMILY Ribosomal protein S5 domain 2-like 350 554 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03152 Car-Chr7 58726838 58732736 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03152 K04485 - gmx:100794165 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03152 07 58726838 58732736 Car07g03152 07 58726838 58732736 ECH
Car01g02739 01 52755417 52764916 Car07g03152 07 58726838 58732736 PCT