Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02739 ATGAGACTTCTCAGAACAATCTTCATCCACCACCGCAGGCGCCACCACCTCCTCAACCCCAAATCCGTCTTTTCGTCTTTAGTTTCCAACTCCTCAGCAAAAATAGCACAAGACGATGGGGAATCCCTACATTTCAATACAAGTAACCAACCAACCACTAGTTGGAGCATGTACGCAAACGTAGTCGCGAAGCAGAGAATCAACGATAACAGCGACGAAGAAATCGAAGAAGAAAAACCAATCGAAAGCGAAAATGGAAACATGCTAAATTTGAAGAACAGAACCATAATTAGAACAACGAAGAGAAGTTCGGGGAAGGTGAAAACTCAGTGGGTTTGTTGCAATTGCGGGTTTACTGCAGGACAATGGTGGGGAACGTGTCCTTCTTGTAGCAATGTTGGAACAATGAAAGAGTTTCATGAAGCTAAACTCAATGATACTGTTGATAATAGTAAGCTCAGAAATGGTTTATCAGTTTCTGAGGATTCAATGGGAACGTGGCTTCCACAGAGAGGTGGTCAATTGAAACCCGTTAATTTGAGTGAGGTTTACCGTGGATTCAATCTGAAGGGTTGGAGATTTCCTTTGTCTGGTTCTTTTGGAGATGAAGTTTCTACTGTGCTTGGTGGTGGTCTTGTACCAGGCTCTTTGAATTTGGTTAGTGGTGATCCTGGTGTTGGGAAGAGTACCCTTCTGTTGCAGATGGCAGCATTGATAGCAGATGGAAGCAATGGCGGTGAGGCTTCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTCACAGAGCAGATCGCCTTGGGATTAAGTCTGATATTTATTTGTATTCAAGTACGGATATTGAGGACATATTAAGGATCGCTCAGTCTCTTCCAATTCGGGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGATTACCGGGAAGTGCTGGAGGGATTGTGCAGGTGAAAGAATGTACTTCGGCTTTGATGCGGTTTGCTAAAACGACTAACATCCCAGTACTTTTGATTGGACATGTGACAAAATCTGGTGACATAGCCGGTCCTCGTGTTCTGGAGCATATTGTTGATGTTGTTTTGTACTTGGAAGGTGAGAGGTTCACTTCATATCGAATGCTCCGTGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACAATCAGGATTTAAGGCTGTTTCCAATGCTACTGAAATGTTTCTTACTGAACAAGACCCTGATTCAGATGTTTTAGTTGGGTTGGCTTTTACTGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAATTCAGGCACTCTGCCTTTTGCATCCCACGATATCAGGGTCAACTTCAAGAGTAGTTAATGGAATTGACACAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTCATATCCCAGTACATGCCGTGCTTTTGAATGTTGTTAGTGGATTGACACTGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGtttcttgGAGTACCCTATTCCAAAGGGCGTTGCATTCATTGGGGAAATTGGCCTTAGCGGAGAGCTTCGTACGGTTCCTAGAATCGACAAAAGAGTACATGCATTGGCGAAGTTGGGTTACAGAAAGTGTGTAGTACCGAAGCAAGCTGTAAAAGCTTTAGGAACTGAAGGTCTAGAAAATATTAAAGTAGTAGGTTGCAAGAATCTAAAAGAGTTTATTAACGAAGTATTCAGCAGTAAAGACGATTAA 1791 0.4204 MRLLRTIFIHHRRRHHLLNPKSVFSSLVSNSSAKIAQDDGESLHFNTSNQPTTSWSMYANVVAKQRINDNSDEEIEEEKPIESENGNMLNLKNRTIIRTTKRSSGKVKTQWVCCNCGFTAGQWWGTCPSCSNVGTMKEFHEAKLNDTVDNSKLRNGLSVSEDSMGTWLPQRGGQLKPVNLSEVYRGFNLKGWRFPLSGSFGDEVSTVLGGGLVPGSLNLVSGDPGVGKSTLLLQMAALIADGSNGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGLPGSAGGIVQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSQSGFKAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEIQALCLLHPTISGSTSRVVNGIDTNRANMIKCVLIKQAGLHIPVHAVLLNVVSGLTLTETAGDLAIAAAICSSFLEYPIPKGVAFIGEIGLSGELRTVPRIDKRVHALAKLGYRKCVVPKQAVKALGTEGLENIKVVGCKNLKEFINEVFSSKDD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02739 596 TIGRFAM sms: DNA repair protein RadA 106 585 IPR004504 GO:0003684|GO:0005524|GO:0006281
Car01g02739 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 397 IPR027417 -
Car01g02739 596 Pfam Rubredoxin metal binding domain 111 138 IPR041166 -
Car01g02739 596 SUPERFAMILY Ribosomal protein S5 domain 2-like 383 591 IPR020568 -
Car01g02739 596 ProSiteProfiles RecA family profile 1. 181 346 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Car01g02739 596 Gene3D - 413 596 IPR014721 -
Car01g02739 596 Gene3D - 203 403 IPR027417 -
Car01g02739 596 SMART AAA_5 214 372 IPR003593 -
Car01g02739 596 PRINTS DNA repair protein radA signature 113 137 - -
Car01g02739 596 PRINTS DNA repair protein radA signature 206 234 - -
Car01g02739 596 PRINTS DNA repair protein radA signature 302 326 - -
Car01g02739 596 PRINTS DNA repair protein radA signature 341 369 - -
Car01g02739 596 PRINTS DNA repair protein radA signature 376 402 - -
Car01g02739 596 PRINTS DNA repair protein radA signature 455 478 - -
Car01g02739 596 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 593 - -
Car01g02739 596 Pfam AAA domain 205 350 - -
Car01g02739 596 Pfam Subunit ChlI of Mg-chelatase 475 562 - -
Car01g02739 596 PANTHER DNA REPAIR PROTEIN RADA 1 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02739 Car-Chr1 52755417 52764916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02739 K04485 - gmx:100791181 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02739 01 52755417 52764916 Car01g02739 01 52755417 52764916 ECH
Car01g02739 01 52755417 52764916 Car07g03152 07 58726838 58732736 PCT